RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KIAA2013Q8IYS2 634 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 ANKRD35Q8N283 1001 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 SMRP1Q8NCR6 262 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 HINFPQ9BQA5 517 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 C11orf84Q9BUA3 381 aaPredicted RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 PCGF6Q9BYE7 350 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 CTDP1Q9Y5B0 961 aaPredicted RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 GPR179Q6PRD1 2367 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 ASTN1O14525 1302 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 A0A1W2PRG0 241 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 ATP2A1O14983 1001 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 DYNC1LI2O43237 492 aaPredicted RBP9.78□□□□□ -0.84
USP54-211ENST00000474929 KPNA6O60684 536 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 TBX10O75333 385 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 CXCL10P02778 98 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 RB1P06400 928 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 SELPP16109 830 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 ATF7P17544 494 aaPredicted RBP9.78□□□□□ -0.84
USP54-211ENST00000474929 GUCY1A2P33402 732 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 SHMT1P34896 483 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 HTRA4P83105 476 aaPredicted RBP9.78□□□□□ -0.84
USP54-211ENST00000474929 ICA1Q05084 483 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 COASYQ13057 564 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 MTMR3Q13615 1198 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 LRRC8DQ7L1W4 858 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 GPR161Q8N6U8 529 aaKnown RBP9.78□□□□□ -0.84
USP54-211ENST00000474929 CHST13Q8NET6 341 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 TET1Q8NFU7 2136 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 XAGE2Q96GT9 111 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 CHAMP1Q96JM3 812 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 MTG1Q9BT17 334 aaPredicted RBP9.78□□□□□ -0.84
USP54-211ENST00000474929 KATNBL1Q9H079 304 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 GOPCQ9HD26 462 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 FANCIQ9NVI1 1328 aa9.78□□□□□ -0.84
USP54-211ENST00000474929 SCN10AQ9Y5Y9 1956 aa9.77□□□□□ -0.84
USP54-211ENST00000474929 USP17L12C9JPN9 530 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 USP17L21D6R901 530 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 CLCN5P51795 746 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 PURAQ00577 322 aaKnown RBP9.77□□□□□ -0.85
USP54-211ENST00000474929 RBL2Q08999 1139 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 HYAL1Q12794 435 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 ASTLQ6HA08 431 aaPredicted RBP9.77□□□□□ -0.85
USP54-211ENST00000474929 TMEM192Q8IY95 271 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 SPICE1Q8N0Z3 855 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 REPS2Q8NFH8 660 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 RUBCNQ92622 972 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 YME1L1Q96TA2 773 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 MFSD1Q9H3U5 465 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 SWAP70Q9UH65 585 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 EMSYQ7Z589 1322 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 MICAL3Q7RTP6 2002 aa9.77□□□□□ -0.85
USP54-211ENST00000474929 NLRC5Q86WI3 1866 aa9.76□□□□□ -0.85
USP54-211ENST00000474929 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.76□□□□□ -0.85
USP54-211ENST00000474929 TBC1D9Q6ZT07 1266 aa9.76□□□□□ -0.85
USP54-211ENST00000474929 TMCO2Q7Z6W1 182 aaPredicted RBP9.76□□□□□ -0.85
USP54-211ENST00000474929 TMEM105Q8N8V8 129 aa9.76□□□□□ -0.85
USP54-211ENST00000474929 MSLNLQ96KJ4 702 aa9.76□□□□□ -0.85
USP54-211ENST00000474929 VTA1Q9NP79 307 aa9.76□□□□□ -0.85
USP54-211ENST00000474929 SH2B1Q9NRF2 756 aaPredicted RBP9.76□□□□□ -0.85
USP54-211ENST00000474929 C5orf67F2Z3F1 127 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 SMPD1P17405 629 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 OAZ1P54368 228 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 TIMM10P62072 90 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 DLX2Q07687 328 aaPredicted RBP9.75□□□□□ -0.85
USP54-211ENST00000474929 FAM117BQ6P1L5 589 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 MYOCDQ8IZQ8 938 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 SLF1Q9BQI6 1058 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 COPRSQ9NQ92 184 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 SORCS3Q9UPU3 1222 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 MYH8P13535 1937 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 PTPRCP08575 1304 aa9.75□□□□□ -0.85
USP54-211ENST00000474929 NAV1Q8NEY1 1877 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 SPTBN2O15020 2390 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 ZBED4O75132 1171 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 MMP1P03956 469 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 POLR3DP05423 398 aaPredicted RBP9.74□□□□□ -0.85
USP54-211ENST00000474929 ADRB1P08588 477 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 SRGAP2BP0DMP2 458 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 CTNNB1P35222 781 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 RRP1P56182 461 aaKnown RBP9.74□□□□□ -0.85
USP54-211ENST00000474929 GABPAQ06546 454 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 ADAM15Q13444 863 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 RSPO4Q2I0M5 234 aaPredicted RBP9.74□□□□□ -0.85
USP54-211ENST00000474929 DUSP28Q4G0W2 176 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 PI16Q6UXB8 463 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 WWC1Q8IX03 1113 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 CCER1Q8TC90 406 aaPredicted RBP9.74□□□□□ -0.85
USP54-211ENST00000474929 BORCS6Q96GS4 357 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 RPGRIP1Q96KN7 1286 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 CCDC17Q96LX7 622 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 FGD4Q96M96 766 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 IGSF5Q9NSI5 407 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 USP15Q9Y4E8 981 aaPredicted RBP9.74□□□□□ -0.85
USP54-211ENST00000474929 PCDHGC5Q9Y5F6 944 aa9.74□□□□□ -0.85
USP54-211ENST00000474929 OTOGLQ3ZCN5 2332 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 LOC102724159A0A0B4J2E5 919 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 PRR5-ARHGAP8B1AHC4 643 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 NKRFO15226 690 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP54-211ENST00000474929 MYL3P08590 195 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 UBTFL1P0CB47 393 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms