RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 KRT27Q7Z3Y8 459 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 CKAP2LQ8IYA6 745 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 SHKBP1Q8TBC3 707 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 HNRNPLLQ8WVV9 542 aaKnown RBP8.27□□□□□ -1.09
PTCD3-208ENST00000469585 VWCEQ96DN2 955 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 LTV1Q96GA3 475 aaPredicted RBP8.27□□□□□ -1.09
PTCD3-208ENST00000469585 HEXIM2Q96MH2 286 aaKnown RBP8.27□□□□□ -1.09
PTCD3-208ENST00000469585 SLC6A18Q96N87 628 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 DNAJC2Q99543 621 aaKnown RBP8.27□□□□□ -1.09
PTCD3-208ENST00000469585 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.27□□□□□ -1.09
PTCD3-208ENST00000469585 ACTR10Q9NZ32 417 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 SLC12A7Q9Y666 1083 aa8.27□□□□□ -1.09
PTCD3-208ENST00000469585 FLT4P35916 1363 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 FAM86C2PA6NEL3 165 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 RBAK-RBAKDNI3L0D1 243 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 CYP27A1Q02318 531 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 NBPF6Q5VWK0 638 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 SLC51AQ86UW1 340 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 RAPGEF4Q8WZA2 1011 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 IP6K1Q92551 441 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 NBPF4Q96M43 638 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 CFAP53Q96M91 514 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 OVOS2A0A0J9YW53 1432 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 OVOS2Q6IE36 1432 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 SPATA31A1Q5TZJ5 1347 aa8.26□□□□□ -1.09
PTCD3-208ENST00000469585 COL5A2P05997 1499 aaPredicted RBP8.26□□□□□ -1.09
PTCD3-208ENST00000469585 WDR64B1ANS9 1081 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 EXOC5O00471 708 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 FURINP09958 794 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 ETV3P41162 512 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 CNGB1Q14028 1251 aaPredicted RBP8.25□□□□□ -1.09
PTCD3-208ENST00000469585 RAB33AQ14088 237 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 DDB1Q16531 1140 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 CYP27C1Q4G0S4 372 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 ZNF746Q6NUN9 644 aaPredicted RBP8.25□□□□□ -1.09
PTCD3-208ENST00000469585 ZDHHC13Q8IUH4 622 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 KREMEN1Q96MU8 473 aa8.25□□□□□ -1.09
PTCD3-208ENST00000469585 ZNF214Q9UL59 606 aaPredicted RBP8.25□□□□□ -1.09
PTCD3-208ENST00000469585 MYOM1P52179 1685 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 CRYBG1Q9Y4K1 1723 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 RGS12O14924 1447 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 IGF2BP3O00425 579 aaKnown RBP eCLIP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 CLEC3AO75596 197 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 IL2RBP14784 551 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 HMGB2P26583 209 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 HOXC9P31274 260 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 PMS1P54277 932 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 RRS1Q15050 365 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 CELF2-AS1Q8N7Q2 184 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 RNF141Q8WVD5 230 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 DHRS1Q96LJ7 313 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 METTL22Q9BUU2 404 aaPredicted RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 PHAXQ9H814 394 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 PRDM5Q9NQX1 630 aaPredicted RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 SUCOQ9UBS9 1254 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 TPX2Q9ULW0 747 aaKnown RBP8.24□□□□□ -1.09
PTCD3-208ENST00000469585 MAPK8IP1Q9UQF2 711 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 LTN1O94822 1766 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 MAP3K19Q56UN5 1328 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 WASHC2AQ641Q2 1341 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 USP54Q70EL1 1684 aa8.24□□□□□ -1.09
PTCD3-208ENST00000469585 SERINC3Q13530 473 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 CPSF6Q16630 551 aaKnown RBP eCLIP8.23□□□□□ -1.09
PTCD3-208ENST00000469585 CC2D1BQ5T0F9 858 aaKnown RBP8.23□□□□□ -1.09
PTCD3-208ENST00000469585 SFRP5Q5T4F7 317 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 NBPF12Q5TAG4 269 aaPredicted RBP8.23□□□□□ -1.09
PTCD3-208ENST00000469585 SOGA3Q5TF21 947 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 DUSP27Q5VZP5 1158 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 C22orf34Q6ZV56 151 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 PPFIBP1Q86W92 1011 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 MICAL1Q8TDZ2 1067 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 COX4I2Q96KJ9 171 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 FBXL18Q96ME1 805 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 OSBPL1AQ9BXW6 950 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 ATG3Q9NT62 314 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 GTF2IRD1Q9UHL9 959 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 U3KQE9 123 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 FAM208AQ9UK61 1670 aaKnown RBP8.23□□□□□ -1.09
PTCD3-208ENST00000469585 NFAT5O94916 1531 aa8.23□□□□□ -1.09
PTCD3-208ENST00000469585 CAMTA1Q9Y6Y1 1673 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 PRR19A6NJB7 356 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 C9IYK1 514 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 CYP7A1P22680 504 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 PRSS36Q5K4E3 855 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 KLHL6Q8WZ60 621 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 ASPNQ9BXN1 380 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 LNPKQ9C0E8 428 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 PCDHB10Q9UN67 800 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 NUDCQ9Y266 331 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 R3HCC1Q9Y3T6 440 aaKnown RBP8.22□□□□□ -1.09
PTCD3-208ENST00000469585 NRAPQ86VF7 1730 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 INSRP06213 1382 aa8.22□□□□□ -1.09
PTCD3-208ENST00000469585 ZNF865P0CJ78 1059 aaPredicted RBP8.21□□□□□ -1.1
PTCD3-208ENST00000469585 ITGB7P26010 798 aa8.21□□□□□ -1.1
PTCD3-208ENST00000469585 FXNQ16595 210 aa8.21□□□□□ -1.1
PTCD3-208ENST00000469585 LARP1BQ659C4 914 aaKnown RBP8.21□□□□□ -1.1
PTCD3-208ENST00000469585 ZNF512BQ96KM6 892 aaPredicted RBP8.21□□□□□ -1.1
PTCD3-208ENST00000469585 Q96M66 194 aa8.21□□□□□ -1.1
PTCD3-208ENST00000469585 TRIM55Q9BYV6 548 aa8.21□□□□□ -1.1
PTCD3-208ENST00000469585 SEMA6BQ9H3T3 888 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms