RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 KCTD2Q14681 263 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 MORN1Q5T089 497 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 COL13A1Q5TAT6 717 aaPredicted RBP17.46■□□□□ 0.39
NPHP4-205ENST00000466897 MCTP2Q6DN12 878 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 RNF207Q6ZRF8 634 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 BICD2Q8TD16 824 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 TRIM47Q96LD4 638 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 PSTPIP2Q9H939 334 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 C6orf50Q9HD87 102 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 PRDM10Q9NQV6 1147 aa17.46■□□□□ 0.39
NPHP4-205ENST00000466897 LOC102724159A0A0B4J2E5 919 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 SMCO2A6NFE2 343 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 HSP90AA1P07900 732 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 HSPA8P11142 646 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 PDIA4P13667 645 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 PDCP20941 246 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 TRIM29Q14134 588 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 PWP2Q15269 919 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 WDR78Q5VTH9 848 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 ANKRD35Q8N283 1001 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 FBXO18Q8NFZ0 1043 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 USP6NLQ92738 828 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 C8orf76Q96K31 380 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 CWC22Q9HCG8 908 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 DIS3Q9Y2L1 958 aaKnown RBP17.45■□□□□ 0.38
NPHP4-205ENST00000466897 MYH7BA7E2Y1 1941 aa17.45■□□□□ 0.38
NPHP4-205ENST00000466897 GCOM1H8Y6P7 765 aaPredicted RBP17.44■□□□□ 0.38
NPHP4-205ENST00000466897 MEIS2O14770 477 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 HOXC6P09630 235 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 POLR2MP0CAP2 368 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 ADORA2AP29274 412 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 CLK2P49760 499 aaKnown RBP17.44■□□□□ 0.38
NPHP4-205ENST00000466897 PRMT2P55345 433 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 NLRP5P59047 1200 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 RPS6P62753 249 aaKnown RBP17.44■□□□□ 0.38
NPHP4-205ENST00000466897 NPY5RQ15761 445 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 NSMFQ6X4W1 530 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 FAM133AQ8N9E0 248 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 CD99L2Q8TCZ2 262 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 NUDT12Q9BQG2 462 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 ARHGAP39Q9C0H5 1083 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 TSKSQ9UJT2 592 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 GJD2Q9UKL4 321 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 PCDHA4Q9UN74 947 aa17.44■□□□□ 0.38
NPHP4-205ENST00000466897 MCM3APO60318 1980 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 M0R2N6 131 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 DTNBO60941 627 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 CFBP00751 764 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 MMP1P03956 469 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 HOXD10P28358 340 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 MAP2K5Q13163 448 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 AP3B2Q13367 1082 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 BAATQ14032 418 aaPredicted RBP17.43■□□□□ 0.38
NPHP4-205ENST00000466897 KRT40Q6A162 431 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 SLC30A10Q6XR72 485 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 ZNF467Q7Z7K2 595 aaPredicted RBP17.43■□□□□ 0.38
NPHP4-205ENST00000466897 DNERQ8NFT8 737 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 SLC5A4Q9NY91 659 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 FRMPD4Q14CM0 1322 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 KIAA1217Q5T5P2 1943 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 MYH15Q9Y2K3 1946 aa17.43■□□□□ 0.38
NPHP4-205ENST00000466897 FOSP01100 380 aaPredicted RBP17.42■□□□□ 0.38
NPHP4-205ENST00000466897 XRCC5P13010 732 aaKnown RBP17.42■□□□□ 0.38
NPHP4-205ENST00000466897 RGS2P41220 211 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 CAP1Q01518 475 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 IRF5Q13568 498 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 ZNF792Q3KQV3 632 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 REXO1Q8N1G1 1221 aaKnown RBP17.42■□□□□ 0.38
NPHP4-205ENST00000466897 SYTL5Q8TDW5 730 aaPredicted RBP17.42■□□□□ 0.38
NPHP4-205ENST00000466897 TBC1D5Q92609 795 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 APBA2Q99767 749 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 BRMS1Q9HCU9 246 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 SRRDQ9UH36 339 aa17.42■□□□□ 0.38
NPHP4-205ENST00000466897 POTEB2H3BUK9 544 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 LARP1BQ659C4 914 aaKnown RBP17.41■□□□□ 0.38
NPHP4-205ENST00000466897 BLIDQ8IZY5 108 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 MSL3Q8N5Y2 521 aaKnown RBP17.41■□□□□ 0.38
NPHP4-205ENST00000466897 GJB4Q9NTQ9 266 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 COL20A1Q9P218 1284 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 ADD3Q9UEY8 706 aaKnown RBP17.41■□□□□ 0.38
NPHP4-205ENST00000466897 KCNJ14Q9UNX9 436 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 RPTORQ8N122 1335 aa17.41■□□□□ 0.38
NPHP4-205ENST00000466897 COBLO75128 1261 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 HOXA13P31271 388 aaPredicted RBP17.4■□□□□ 0.38
NPHP4-205ENST00000466897 KRT2P35908 639 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 LBX1P52954 281 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 SAFBQ15424 915 aaKnown RBP eCLIP17.4■□□□□ 0.38
NPHP4-205ENST00000466897 IFFO2Q5TF58 517 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 USP17L6PQ6QN14 398 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 TRMT44Q8IYL2 757 aaKnown RBP17.4■□□□□ 0.38
NPHP4-205ENST00000466897 FGD4Q96M96 766 aa17.4■□□□□ 0.38
NPHP4-205ENST00000466897 FOXP1Q9H334 677 aaPredicted RBP17.4■□□□□ 0.38
NPHP4-205ENST00000466897 SPDYE3A6NKU9 549 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 IGHA2P01877 340 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 PGK2P07205 417 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 SYT1P21579 422 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 PRKCZQ05513 592 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 UBE2SQ16763 222 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 MAMDC4Q6UXC1 1216 aa17.39■□□□□ 0.37
NPHP4-205ENST00000466897 OTOP1Q7RTM1 612 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms