RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 ANGPTL3Q9Y5C1 460 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 SRGAP2BP0DMP2 458 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 STAT1P42224 750 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 CMTR1Q8N1G2 835 aaKnown RBP9.54□□□□□ -0.88
HPS4-209ENST00000466781 HDAC11Q96DB2 347 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 DDX25Q9UHL0 483 aaKnown RBP9.54□□□□□ -0.88
HPS4-209ENST00000466781 ATP8B3O60423 1300 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 SPDYE2BA6NHP3 402 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 LRRIQ4A6NIV6 560 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 MGEA5O60502 916 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 CSPG5O95196 566 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 SPDYE6P0CI01 402 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 KRT10P13645 584 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 GRAPQ13588 217 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 GRAPLQ8TC17 118 aaPredicted RBP9.54□□□□□ -0.88
HPS4-209ENST00000466781 GCNAQ96QF7 691 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 SNX14Q9Y5W7 946 aa9.54□□□□□ -0.88
HPS4-209ENST00000466781 CLRN2A0PK11 232 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 PSDA5PKW4 1024 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 A6NNZ2 444 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ECE1P42892 770 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 TUBB8Q3ZCM7 444 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 CDC37L1Q7L3B6 337 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 CCDC84Q86UT8 332 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 CCDC13Q8IYE1 715 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 KBTBD3Q8NAB2 608 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 MGARPQ8TDB4 240 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 DDX27Q96GQ7 796 aaKnown RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 SPON1Q9HCB6 807 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 NDUFAB1O14561 156 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ZNF202O95125 648 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 STMN1P16949 149 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ICA1Q05084 483 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 RNASELQ05823 741 aaKnown RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 POLA2Q14181 598 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 KRT40Q6A162 431 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ARMCX5Q6P1M9 558 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 MYOCDQ8IZQ8 938 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ANKRD36BP1Q96IX9 119 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 NUB1Q9Y5A7 615 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 FAM170AA1A519 330 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 SEMA3EO15041 775 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ADRA2BP18089 450 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 RAB44Q7Z6P3 723 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 PLA2G4DQ86XP0 818 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 LRRC47Q8N1G4 583 aaKnown RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 ZSCAN10Q96SZ4 725 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 PPP1R12CQ9BZL4 782 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 SEPT9Q9UHD8 586 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 COL15A1P39059 1388 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 CLGNO14967 610 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 C21orf2O43822 256 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ZNF853P0CG23 659 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 SAT1P21673 171 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ANKRD42Q8N9B4 389 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 RETREG2Q8NC44 543 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ERO1AQ96HE7 468 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 PSMB7Q99436 277 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 LMCD1Q9NZU5 365 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 TPCN1Q9ULQ1 816 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 PREX1Q8TCU6 1659 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 RAD17O75943 681 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 ZSCAN20P17040 1043 aaPredicted RBP9.53□□□□□ -0.88
HPS4-209ENST00000466781 TECP42680 631 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 IRX4P78413 519 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 SMC5Q8IY18 1101 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 SDR42E1Q8WUS8 393 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 IMPACTQ9P2X3 320 aa9.53□□□□□ -0.88
HPS4-209ENST00000466781 USP17L3A6NCW0 530 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 USP17L4A6NCW7 530 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 DLATP10515 647 aaKnown RBP9.52□□□□□ -0.88
HPS4-209ENST00000466781 ABCB4P21439 1286 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 ADCY8P40145 1251 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 IREB2P48200 963 aaKnown RBP9.52□□□□□ -0.88
HPS4-209ENST00000466781 TXNRD1Q16881 649 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 USP17L1Q7RTZ2 530 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 SDCCAG3Q96C92 435 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 PLEKHF1Q96S99 279 aa9.52□□□□□ -0.88
HPS4-209ENST00000466781 IFIH1Q9BYX4 1025 aaKnown RBP9.52□□□□□ -0.88
HPS4-209ENST00000466781 FAM207AQ9NSI2 230 aaPredicted RBP9.52□□□□□ -0.88
HPS4-209ENST00000466781 SETBP1Q9Y6X0 1596 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 IFNB1P01574 187 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 ATXN8OSP0DMR3 200 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 STX2P32856 288 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 TMTC4Q5T4D3 741 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 SLC12A6Q9UHW9 1150 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 CARMIL3Q8ND23 1372 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 PPFIA4O75335 1185 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 CIAO1O76071 339 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 PDE6AP16499 860 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 INPP1P49441 399 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 PPFIA1Q13136 1202 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 DIP2AQ14689 1571 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 MIS18BP1Q6P0N0 1132 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 POTEDQ86YR6 584 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 SNX25Q9H3E2 840 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 NLRC4Q9NPP4 1024 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 ATG3Q9NT62 314 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 USP14P54578 494 aa9.52□□□□□ -0.89
HPS4-209ENST00000466781 KIAA1841Q6NSI8 718 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms