RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 GMCL1Q96IK5 515 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 LRRC37A2A6NM11 1700 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 PIEZO1Q92508 2521 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 HMMRO75330 724 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 IQCF3P0C7M6 154 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 FAM160B2Q86V87 743 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 NEDD1Q8NHV4 660 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 OSBP2Q969R2 916 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 ZNF287Q9HBT7 754 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 POLR3EQ9NVU0 708 aa17.21■□□□□ 0.35
CXCR4-203ENST00000466288 PITPNM1O00562 1244 aa17.2■□□□□ 0.34
CXCR4-203ENST00000466288 PLA2G6O60733 806 aa17.2■□□□□ 0.34
CXCR4-203ENST00000466288 PLIN4Q96Q06 1357 aa17.2■□□□□ 0.34
CXCR4-203ENST00000466288 KIF28PB7ZC32 967 aa17.19■□□□□ 0.34
CXCR4-203ENST00000466288 SNAP25P60880 206 aa17.19■□□□□ 0.34
CXCR4-203ENST00000466288 MTG1Q9BT17 334 aaPredicted RBP17.19■□□□□ 0.34
CXCR4-203ENST00000466288 WDR11Q9BZH6 1224 aa17.19■□□□□ 0.34
CXCR4-203ENST00000466288 ISY1Q9ULR0 285 aaKnown RBP17.19■□□□□ 0.34
CXCR4-203ENST00000466288 MYL3P08590 195 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 MCCP23508 829 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 SLC1A4P43007 532 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 CPT1AP50416 773 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 IKQ13123 557 aaPredicted RBP17.18■□□□□ 0.34
CXCR4-203ENST00000466288 NBPF20Q3BBV1 942 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 ALYREFQ86V81 257 aaKnown RBP17.18■□□□□ 0.34
CXCR4-203ENST00000466288 PPP1R13LQ8WUF5 828 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 APPBP2Q92624 585 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 CHMP4CQ96CF2 233 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 FTOQ9C0B1 505 aaKnown RBP eCLIP17.18■□□□□ 0.34
CXCR4-203ENST00000466288 RBM47A0AV96 593 aaKnown RBP17.18■□□□□ 0.34
CXCR4-203ENST00000466288 LCHNA4D1U4 455 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 GPAA1O43292 621 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 BAIAP3O94812 1187 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 TSPY3P0CV98 308 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 TSPY8P0CW00 308 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 TDO2P48775 406 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 FAM47CQ5HY64 1035 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 NFRKBQ6P4R8 1299 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 NSMFQ6X4W1 530 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 KCTD1Q719H9 257 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 RETREG2Q8NC44 543 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 ZBTB40Q9NUA8 1239 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 LMCD1Q9NZU5 365 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 PRR12Q9ULL5 1215 aa17.18■□□□□ 0.34
CXCR4-203ENST00000466288 MUC6Q6W4X9 2439 aa17.17■□□□□ 0.34
CXCR4-203ENST00000466288 MYH4Q9Y623 1939 aa17.17■□□□□ 0.34
CXCR4-203ENST00000466288 TFAP4Q01664 338 aa17.17■□□□□ 0.34
CXCR4-203ENST00000466288 KBTBD3Q8NAB2 608 aa17.17■□□□□ 0.34
CXCR4-203ENST00000466288 GPHNQ9NQX3 736 aaPredicted RBP17.17■□□□□ 0.34
CXCR4-203ENST00000466288 SCN5AQ14524 2016 aa17.17■□□□□ 0.34
CXCR4-203ENST00000466288 PRR33A8MZF0 331 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 GNAT2P19087 354 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 ALDH5A1P51649 535 aaPredicted RBP17.16■□□□□ 0.34
CXCR4-203ENST00000466288 BAATQ14032 418 aaPredicted RBP17.16■□□□□ 0.34
CXCR4-203ENST00000466288 GPNMBQ14956 572 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 RCSD1Q6JBY9 416 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 RASGRP2Q7LDG7 609 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 OR6J1Q8NGC5 347 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 GDPD5Q8WTR4 605 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 ADD3Q9UEY8 706 aaKnown RBP17.16■□□□□ 0.34
CXCR4-203ENST00000466288 CCPG1Q9ULG6 757 aa17.16■□□□□ 0.34
CXCR4-203ENST00000466288 MYH7P12883 1935 aa17.15■□□□□ 0.34
CXCR4-203ENST00000466288 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 PATL2C9JE40 543 aaKnown RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 M0R2C6 588 aa17.15■□□□□ 0.34
CXCR4-203ENST00000466288 RNF113AO15541 343 aaKnown RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 APPP05067 770 aa17.15■□□□□ 0.34
CXCR4-203ENST00000466288 PTPN11Q06124 597 aaPredicted RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 BFSP2Q13515 415 aa17.15■□□□□ 0.34
CXCR4-203ENST00000466288 TMCO2Q7Z6W1 182 aaPredicted RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 IFNL3Q8IZI9 196 aa17.15■□□□□ 0.34
CXCR4-203ENST00000466288 UBE2ZQ9H832 354 aaPredicted RBP17.15■□□□□ 0.34
CXCR4-203ENST00000466288 LOC102724159A0A0B4J2E5 919 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 A6NJR5 290 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 ICAM1P05362 532 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 KCNJ6P48051 423 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 WDR5P61964 334 aaKnown RBP17.14■□□□□ 0.33
CXCR4-203ENST00000466288 PDE4BQ07343 736 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 PWP2Q15269 919 aaKnown RBP17.14■□□□□ 0.33
CXCR4-203ENST00000466288 FAM178BQ8IXR5 827 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 GJD3Q8N144 294 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 SUGCTQ9HAC7 445 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 ECHDC1Q9NTX5 307 aa17.14■□□□□ 0.33
CXCR4-203ENST00000466288 NFIBO00712 420 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 SMARCA5O60264 1052 aaPredicted RBP17.13■□□□□ 0.33
CXCR4-203ENST00000466288 KPNA6O60684 536 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 BRDTQ58F21 947 aaPredicted RBP17.13■□□□□ 0.33
CXCR4-203ENST00000466288 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.13■□□□□ 0.33
CXCR4-203ENST00000466288 CTAGE1Q96RT6 745 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 LRRCC1Q9C099 1032 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 RANBP17Q9H2T7 1088 aaKnown RBP17.13■□□□□ 0.33
CXCR4-203ENST00000466288 STX8Q9UNK0 236 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 SCN10AQ9Y5Y9 1956 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 LCTP09848 1927 aa17.13■□□□□ 0.33
CXCR4-203ENST00000466288 NKRFO15226 690 aaKnown RBP eCLIP17.12■□□□□ 0.33
CXCR4-203ENST00000466288 DEFB103AP81534 67 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 LRRFIP1Q32MZ4 808 aaKnown RBP17.12■□□□□ 0.33
CXCR4-203ENST00000466288 LEXMQ3ZCV2 418 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 COPS5Q92905 334 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 IL17RBQ9NRM6 502 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms