RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 MUM1L1Q5H9M0 696 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 TMEM63BQ5T3F8 832 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 RCSD1Q6JBY9 416 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 IFNL3Q8IZI9 196 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 RETREG2Q8NC44 543 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 ARNTL2Q8WYA1 636 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 HLA-CQ95604 372 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 FTOQ9C0B1 505 aaKnown RBP eCLIP17.18■□□□□ 0.34
SMC1A-204ENST00000463684 EPHX3Q9H6B9 360 aa17.18■□□□□ 0.34
SMC1A-204ENST00000463684 ADD3Q9UEY8 706 aaKnown RBP17.18■□□□□ 0.34
SMC1A-204ENST00000463684 BDP1A6H8Y1 2624 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 SMARCA5O60264 1052 aaPredicted RBP17.17■□□□□ 0.34
SMC1A-204ENST00000463684 SNAP25P60880 206 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 LRRFIP1Q32MZ4 808 aaKnown RBP17.17■□□□□ 0.34
SMC1A-204ENST00000463684 BRDTQ58F21 947 aaPredicted RBP17.17■□□□□ 0.34
SMC1A-204ENST00000463684 FAM47CQ5HY64 1035 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 TMEM31Q5JXX7 168 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 KCTD1Q719H9 257 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 MORC4Q8TE76 937 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 GPATCH3Q96I76 525 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 MTG1Q9BT17 334 aaPredicted RBP17.17■□□□□ 0.34
SMC1A-204ENST00000463684 WDR11Q9BZH6 1224 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 CCPG1Q9ULG6 757 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 MCM3APO60318 1980 aa17.17■□□□□ 0.34
SMC1A-204ENST00000463684 REV3LO60673 3130 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 MYO9BQ13459 2157 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 PLIN4Q96Q06 1357 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 TLL1O43897 1013 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 PURAQ00577 322 aaKnown RBP17.16■□□□□ 0.34
SMC1A-204ENST00000463684 PRR12Q9ULL5 1215 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 STX8Q9UNK0 236 aa17.16■□□□□ 0.34
SMC1A-204ENST00000463684 EPOPA6NHQ4 379 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 M0R2C6 588 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 TAP1Q03518 808 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 NBPF20Q3BBV1 942 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 KRT40Q6A162 431 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 HERC6Q8IVU3 1022 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 OR6J1Q8NGC5 347 aa17.15■□□□□ 0.34
SMC1A-204ENST00000463684 PURBQ96QR8 312 aaKnown RBP17.15■□□□□ 0.34
SMC1A-204ENST00000463684 GBF1Q92538 1859 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 LOC102724159A0A0B4J2E5 919 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 TSPY2A6NKD2 308 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 KPNA6O60684 536 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 ICAM1P05362 532 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 IQCF3P0C7M6 154 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 PPARAQ07869 468 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 BFSP2Q13515 415 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 BAATQ14032 418 aaPredicted RBP17.14■□□□□ 0.33
SMC1A-204ENST00000463684 PWP2Q15269 919 aaKnown RBP17.14■□□□□ 0.33
SMC1A-204ENST00000463684 NAPBQ9H115 298 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 NOD1Q9Y239 953 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 RAD50Q92878 1312 aa17.14■□□□□ 0.33
SMC1A-204ENST00000463684 TCF20Q9UGU0 1960 aaKnown RBP17.13■□□□□ 0.33
SMC1A-204ENST00000463684 ALDH5A1P51649 535 aaPredicted RBP17.13■□□□□ 0.33
SMC1A-204ENST00000463684 NFRKBQ6P4R8 1299 aa17.13■□□□□ 0.33
SMC1A-204ENST00000463684 MPHOSPH6Q99547 160 aaKnown RBP17.13■□□□□ 0.33
SMC1A-204ENST00000463684 MTMR7Q9Y216 660 aa17.13■□□□□ 0.33
SMC1A-204ENST00000463684 MYH4Q9Y623 1939 aa17.13■□□□□ 0.33
SMC1A-204ENST00000463684 MYH7P12883 1935 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 RBM47A0AV96 593 aaKnown RBP17.12■□□□□ 0.33
SMC1A-204ENST00000463684 PTPDC1A2A3K4 754 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 NKRFO15226 690 aaKnown RBP eCLIP17.12■□□□□ 0.33
SMC1A-204ENST00000463684 GPR37L1O60883 481 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 BAIAP3O94812 1187 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 KCNJ6P48051 423 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 PTPN11Q06124 597 aaPredicted RBP17.12■□□□□ 0.33
SMC1A-204ENST00000463684 GRB10Q13322 594 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 CCDC96Q2M329 555 aa17.12■□□□□ 0.33
SMC1A-204ENST00000463684 TRANK1O15050 2925 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 PDE4DQ08499 809 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 PPP2R5BQ15173 497 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 CCDC155Q8N6L0 562 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 ZBED2Q9BTP6 218 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 LMCD1Q9NZU5 365 aa17.11■□□□□ 0.33
SMC1A-204ENST00000463684 NCOR1O75376 2440 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 ARHGEF15O94989 841 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 CALML3P27482 149 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 CHMP4BP1P59074 171 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 TSHZ3Q63HK5 1081 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 SCFD2Q8WU76 684 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 PPP1R13LQ8WUF5 828 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 DCAF4Q8WV16 495 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 SEC62Q99442 399 aaKnown RBP17.1■□□□□ 0.33
SMC1A-204ENST00000463684 RANBP17Q9H2T7 1088 aaKnown RBP17.1■□□□□ 0.33
SMC1A-204ENST00000463684 IL17RBQ9NRM6 502 aa17.1■□□□□ 0.33
SMC1A-204ENST00000463684 A6NJR5 290 aa17.09■□□□□ 0.33
SMC1A-204ENST00000463684 B4DLN1 442 aa17.09■□□□□ 0.33
SMC1A-204ENST00000463684 NFIBO00712 420 aa17.09■□□□□ 0.33
SMC1A-204ENST00000463684 RANBP6O60518 1105 aaKnown RBP17.09■□□□□ 0.33
SMC1A-204ENST00000463684 NMT2O60551 498 aa17.09■□□□□ 0.33
SMC1A-204ENST00000463684 SLC16A2P36021 539 aa17.09■□□□□ 0.33
SMC1A-204ENST00000463684 MRPL12P52815 198 aaKnown RBP17.09■□□□□ 0.33
SMC1A-204ENST00000463684 LRRC37A2A6NM11 1700 aa17.08■□□□□ 0.32
SMC1A-204ENST00000463684 PI4K2BG5E9Z4 385 aa17.08■□□□□ 0.32
SMC1A-204ENST00000463684 LPXNO60711 386 aa17.08■□□□□ 0.32
SMC1A-204ENST00000463684 TXNP10599 105 aaKnown RBP17.08■□□□□ 0.32
SMC1A-204ENST00000463684 CTDSPL2Q05D32 466 aa17.08■□□□□ 0.32
SMC1A-204ENST00000463684 PTGISQ16647 500 aa17.08■□□□□ 0.32
SMC1A-204ENST00000463684 SYDE2Q5VT97 1194 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms