RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 POTEB2H3BUK9 544 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 PRPF3O43395 683 aaKnown RBP8.92□□□□□ -0.98
USP4-207ENST00000462673 ADCY3O60266 1144 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 HOXC6P09630 235 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 CPA1P15085 419 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 CYP2B6P20813 491 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 ADORA2AP29274 412 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 GRK4P32298 578 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 HMGN5P82970 282 aaKnown RBP8.92□□□□□ -0.98
USP4-207ENST00000462673 GRB14Q14449 540 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 MORN1Q5T089 497 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 RNF207Q6ZRF8 634 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 TMTC3Q6ZXV5 915 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP4-207ENST00000462673 HOMER1Q86YM7 354 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 CCDC144CPQ8IYA2 1237 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 CCDC82Q8N4S0 544 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 FAM184AQ8NB25 1140 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 NKX2-3Q8TAU0 364 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 PRIMPOLQ96LW4 560 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 AGBL1Q96MI9 1066 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 MYL10Q9BUA6 226 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 TMEM106CQ9BVX2 250 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 PORCNQ9H237 461 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 EHMT1Q9H9B1 1298 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 RNF146Q9NTX7 359 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 GJD2Q9UKL4 321 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 KIF3AQ9Y496 699 aa8.92□□□□□ -0.98
USP4-207ENST00000462673 V9GY48 417 aaPredicted RBP8.92□□□□□ -0.98
USP4-207ENST00000462673 ZNF536O15090 1300 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 PTPDC1A2A3K4 754 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 GCOM1H8Y6P7 765 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 ECM2O94769 699 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 POLR2MP0CAP2 368 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 IFNAR1P17181 557 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 GNA11P29992 359 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 ADD1P35611 737 aaKnown RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 AK2P54819 239 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 RBM10P98175 930 aaKnown RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 PRKCZQ05513 592 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 TOB2Q14106 344 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 QRICH1Q2TAL8 776 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 USH1GQ495M9 461 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 OLFML2BQ68BL8 750 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 NSMFQ6X4W1 530 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 ZNF467Q7Z7K2 595 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 TNS4Q8IZW8 715 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 SRBD1Q8N5C6 995 aaKnown RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 DNERQ8NFT8 737 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 MYRIPQ8NFW9 859 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 BICD2Q8TD16 824 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 GPT2Q8TD30 523 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 MTMR8Q96EF0 704 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 PIGSQ96S52 555 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 APBA2Q99767 749 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 CCDC94Q9BW85 323 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 RNF26Q9BY78 433 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 MCOLN1Q9GZU1 580 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 PSTPIP2Q9H939 334 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 SENP2Q9HC62 589 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 GPHNQ9NQX3 736 aaPredicted RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 HOMER2Q9NSB8 354 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.91□□□□□ -0.98
USP4-207ENST00000462673 NRBP1Q9UHY1 535 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 CNPY2Q9Y2B0 182 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 PCNTO95613 3336 aa8.91□□□□□ -0.98
USP4-207ENST00000462673 MSCO60682 206 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 PFKFB2O60825 505 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 DEXIO95424 95 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 CFBP00751 764 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 FOSP01100 380 aaPredicted RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 HMGCRP04035 888 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 RXRAP19793 462 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 CCT2P78371 535 aaKnown RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 TRIM29Q14134 588 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 UVSSAQ2YD98 709 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 UTP14CQ5TAP6 766 aaKnown RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 GALNT17Q6IS24 598 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 PPP1R18Q6NYC8 613 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 CCDC148Q8NFR7 591 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 SMARCC2Q8TAQ2 1214 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 NSUN6Q8TEA1 469 aaKnown RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 IWS1Q96ST2 819 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 LLPHQ9BRT6 129 aaKnown RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 ARHGAP39Q9C0H5 1083 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 C6orf50Q9HD87 102 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 HMX1Q9NP08 348 aaPredicted RBP8.9□□□□□ -0.98
USP4-207ENST00000462673 SH3GLB2Q9NR46 395 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 CYP39A1Q9NYL5 469 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 RIPK3Q9Y572 518 aa8.9□□□□□ -0.98
USP4-207ENST00000462673 RPTORQ8N122 1335 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 SYCE3A1L190 88 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 SPDYE3A6NKU9 549 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 CYTH3O43739 400 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 SCG2P13521 617 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 CALML3P27482 149 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 SNAP25P60880 206 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 STK3Q13188 491 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 BAATQ14032 418 aaPredicted RBP8.89□□□□□ -0.99
USP4-207ENST00000462673 PFKFB3Q16875 520 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms