RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RNF180Q86T96 592 aa21.68■■□□□ 1.06
USP39-209ENST00000458268 PCDH10Q9P2E7 1040 aa21.68■■□□□ 1.06
USP39-209ENST00000458268 ZMYND8Q9ULU4 1186 aaPredicted RBP21.68■■□□□ 1.06
USP39-209ENST00000458268 SNX14Q9Y5W7 946 aa21.68■■□□□ 1.06
USP39-209ENST00000458268 SYNRGQ9UMZ2 1314 aa21.67■■□□□ 1.06
USP39-209ENST00000458268 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 ADCY6O43306 1168 aa21.67■■□□□ 1.06
USP39-209ENST00000458268 PPP1R11O60927 126 aaPredicted RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 C6orf222P0C671 652 aaPredicted RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 IRX5P78411 483 aaPredicted RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 DHX32Q7L7V1 743 aaKnown RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 MCF2L2Q86YR7 1114 aa21.67■■□□□ 1.06
USP39-209ENST00000458268 MPHOSPH6Q99547 160 aaKnown RBP21.67■■□□□ 1.06
USP39-209ENST00000458268 MTA3Q9BTC8 594 aa21.67■■□□□ 1.06
USP39-209ENST00000458268 PDGFCQ9NRA1 345 aa21.67■■□□□ 1.06
USP39-209ENST00000458268 hCG_1642624A0A1W2PR95 340 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 CYTH3O43739 400 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 COL6A1P12109 1028 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 SYN1P17600 705 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 PTGS1P23219 599 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 HSPA4P34932 840 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 LIFRP42702 1097 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 TNFAIP2Q03169 654 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 LRRC26Q2I0M4 334 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 RRP36Q96EU6 259 aaKnown RBP21.66■■□□□ 1.06
USP39-209ENST00000458268 RIOX1Q9H6W3 641 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 SPC25Q9HBM1 224 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 SEC63Q9UGP8 760 aaKnown RBP21.66■■□□□ 1.06
USP39-209ENST00000458268 ATP11BQ9Y2G3 1177 aa21.66■■□□□ 1.06
USP39-209ENST00000458268 CEP290O15078 2479 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 PNMA6FA0A0J9YX94 578 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 KLF18A0A0U1RQI7 1052 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 MYADML2A6NDP7 307 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 CALM1P0DP23 149 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 CALM2P0DP24 149 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 CALM3P0DP25 149 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 HOXA13P31271 388 aaPredicted RBP21.65■■□□□ 1.06
USP39-209ENST00000458268 BLOC1S2Q6QNY1 142 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 TAAR1Q96RJ0 339 aa21.65■■□□□ 1.06
USP39-209ENST00000458268 EIF2AK2P19525 551 aaKnown RBP21.64■■□□□ 1.05
USP39-209ENST00000458268 CASTP20810 708 aaKnown RBP21.64■■□□□ 1.05
USP39-209ENST00000458268 GNAQP50148 359 aa21.64■■□□□ 1.05
USP39-209ENST00000458268 EXOSC10Q01780 885 aaKnown RBP21.64■■□□□ 1.05
USP39-209ENST00000458268 SYTL5Q8TDW5 730 aaPredicted RBP21.64■■□□□ 1.05
USP39-209ENST00000458268 KATNBL1Q9H079 304 aa21.64■■□□□ 1.05
USP39-209ENST00000458268 COL20A1Q9P218 1284 aa21.64■■□□□ 1.05
USP39-209ENST00000458268 GOLGA8AA7E2F4 631 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 GOLGA8BA8MQT2 603 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 B4DLN1 442 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 ZBTB43O43298 467 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 DUSP11O75319 330 aaKnown RBP21.63■■□□□ 1.05
USP39-209ENST00000458268 HMGB1P09429 215 aaKnown RBP21.63■■□□□ 1.05
USP39-209ENST00000458268 MRPL12P52815 198 aaKnown RBP21.63■■□□□ 1.05
USP39-209ENST00000458268 BEX3Q00994 111 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 TSGA10IPQ3SY00 556 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 ARHGEF16Q5VV41 709 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 APOA5Q6Q788 366 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 Q6ZUG5 572 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 SRBD1Q8N5C6 995 aaKnown RBP21.63■■□□□ 1.05
USP39-209ENST00000458268 VTI1AQ96AJ9 217 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 MTMR8Q96EF0 704 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 RMDN3Q96TC7 470 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 AP5M1Q9H0R1 490 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 VTA1Q9NP79 307 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 BRPF3Q9ULD4 1205 aa21.63■■□□□ 1.05
USP39-209ENST00000458268 ADAMTS4O75173 837 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 SMPD1P17405 629 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 RTP1P59025 263 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 APOBRQ0VD83 1088 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 TMEM63BQ5T3F8 832 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 CHRDL2Q6WN34 429 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 TLK2Q86UE8 772 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 FCHSD1Q86WN1 690 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 FANCBQ8NB91 859 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 DNERQ8NFT8 737 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 MAP3K14Q99558 947 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 LZTS2Q9BRK4 669 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 SPZ1Q9BXG8 430 aa21.62■■□□□ 1.05
USP39-209ENST00000458268 DYNC1LI2O43237 492 aaPredicted RBP21.61■■□□□ 1.05
USP39-209ENST00000458268 MYCLP12524 364 aaPredicted RBP21.61■■□□□ 1.05
USP39-209ENST00000458268 PSMA5P28066 241 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 TRAF1Q13077 416 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 KCNA10Q16322 511 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 RTN1Q16799 776 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 GNASQ5JWF2 1037 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 TAPT1Q6NXT6 567 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 SGMS1Q86VZ5 419 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 RGS22Q8NE09 1264 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 BRF1Q92994 677 aa21.61■■□□□ 1.05
USP39-209ENST00000458268 PRDM5Q9NQX1 630 aaPredicted RBP21.61■■□□□ 1.05
USP39-209ENST00000458268 A0A1W2PQ45 241 aaPredicted RBP21.6■■□□□ 1.05
USP39-209ENST00000458268 A0A1W2PQY0 241 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 OPLAHO14841 1288 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 SLC39A5Q6ZMH5 540 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 SEPT14Q6ZU15 432 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 TMTC3Q6ZXV5 915 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 NSUN6Q8TEA1 469 aaKnown RBP21.6■■□□□ 1.05
USP39-209ENST00000458268 WDR11Q9BZH6 1224 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 PHF24Q9UPV7 400 aa21.6■■□□□ 1.05
USP39-209ENST00000458268 GCOM1H8Y6P7 765 aaPredicted RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms