RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	SNHG28	P0DPA3	235 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	BRD3	Q15059	726 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	ASPRV1	Q53RT3	343 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	ZNF771	Q7L3S4	317 aa	Predicted RBP	18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	FAM114A1	Q8IWE2	563 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	RETREG2	Q8NC44	543 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	CRAMP1	Q96RY5	1269 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	ANKZF1	Q9H8Y5	726 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	PUF60	Q9UHX1	559 aa	Known RBP	18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	RASSF10	A6NK89	507 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	FXR2	P51116	673 aa	Known RBP eCLIP	18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	AMPD2	Q01433	879 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	WHAMMP3	Q1A5X7	153 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	MSANTD4	Q8NCY6	345 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	CALML4	Q96GE6	196 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	NUP58	Q9BVL2	599 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	ZSWIM4	Q9H7M6	989 aa		18.95	■□□□□ 0.62
TOM1-210	ENST00000449058	PES1	O00541	588 aa	Known RBP	18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	EDIL3	O43854	480 aa		18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	FCER1A	P12319	257 aa		18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	GRB10	Q13322	594 aa		18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	CNOT6L	Q96LI5	555 aa	Known RBP	18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	C10orf71	Q711Q0	1435 aa		18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	FRMPD2	Q68DX3	1309 aa	Predicted RBP	18.94	■□□□□ 0.62
TOM1-210	ENST00000449058	KLRG2	A4D1S0	409 aa	Predicted RBP	18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	ADCY7	P51828	1080 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	MIIP	Q5JXC2	388 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	CNNM4	Q6P4Q7	775 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	ZNF662	Q6ZS27	426 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	KIAA0895	Q8NCT3	520 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	FUT8	Q9BYC5	575 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	HAUS4	Q9H6D7	363 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	BLOC1S4	Q9NUP1	217 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	STK17A	Q9UEE5	414 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	RAB21	Q9UL25	225 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	POTEB2	H3BUK9	544 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	TXK	P42681	527 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	HERVK_113	P62684	666 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	CALCRL	Q16602	461 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	TSR1	Q2NL82	804 aa	Known RBP	18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	GJD4	Q96KN9	370 aa	Predicted RBP	18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	PNMA5	Q96PV4	448 aa		18.93	■□□□□ 0.62
TOM1-210	ENST00000449058	C6orf229	H3BNL8	230 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	TBC1D8B	Q0IIM8	1120 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	CENPP	Q6IPU0	288 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	HNRNPLL	Q8WVV9	542 aa	Known RBP	18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	COA7	Q96BR5	231 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	LRWD1	Q9UFC0	647 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	SPATA31A6	Q5VVP1	1343 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	PSMD14	O00487	310 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	SLC37A4	O43826	429 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	AKR1B1	P15121	316 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	GTF2I	P78347	998 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	ZBED6	P86452	979 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	DDR1	Q08345	913 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	FIGN	Q5HY92	759 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	SV2B	Q7L1I2	683 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	ERGIC2	Q96RQ1	377 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	SEMA6B	Q9H3T3	888 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	AGPAT5	Q9NUQ2	364 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	TRIM10	Q9UDY6	481 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	SUGT1	Q9Y2Z0	365 aa		18.92	■□□□□ 0.62
TOM1-210	ENST00000449058	PVALEF	A0A1B0GWK0	134 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	PDIA5	Q14554	519 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	LRRC47	Q8N1G4	583 aa	Known RBP	18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	MYO6	Q9UM54	1294 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	GREB1L	Q9C091	1923 aa	Predicted RBP	18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	MYMK	A6NI61	221 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	ONECUT3	O60422	494 aa	Predicted RBP	18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	TFRC	P02786	760 aa	Known RBP	18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	LONRF2	Q1L5Z9	754 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	PPP1R18	Q6NYC8	613 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	UNC13D	Q70J99	1090 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	TMC4	Q7Z404	712 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	EEF2KMT	Q96G04	330 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058	GUCA1B	Q9UMX6	200 aa		18.91	■□□□□ 0.62
TOM1-210	ENST00000449058		A0A1W2PQJ5	194 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	TDP2	O95551	362 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	TRIM21	P19474	475 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	MTIF2	P46199	727 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	KLK7	P49862	253 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	KRT83	P78385	493 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	PICALM	Q13492	652 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	TMEM266	Q2M3C6	531 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	DPP8	Q6V1X1	898 aa	Predicted RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	SP8	Q8IXZ3	490 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	HPS3	Q969F9	1004 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	PNKP	Q96T60	521 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	NOC4L	Q9BVI4	516 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	COA1	Q9GZY4	146 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	DDX4	Q9NQI0	724 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	MYO3B	Q8WXR4	1341 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	CTAGE15	A4D2H0	777 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	POLRMT	O00411	1230 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	CTAGE8	P0CG41	777 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	ZNF543	Q08ER8	600 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	MCM6	Q14566	821 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	CTAGE6	Q86UF2	777 aa		18.9	■□□□□ 0.62

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms