RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 KRT5P13647 590 aa12.14□□□□□ -0.47
HPS4-202ENST00000398145 GLE1Q53GS7 698 aaKnown RBP12.14□□□□□ -0.47
HPS4-202ENST00000398145 MUM1L1Q5H9M0 696 aa12.14□□□□□ -0.47
HPS4-202ENST00000398145 VPS52Q8N1B4 723 aa12.14□□□□□ -0.47
HPS4-202ENST00000398145 LARP4BQ92615 738 aaKnown RBP12.14□□□□□ -0.47
HPS4-202ENST00000398145 ZC3H12CQ9C0D7 883 aaKnown RBP12.14□□□□□ -0.47
HPS4-202ENST00000398145 NDST4Q9H3R1 872 aa12.14□□□□□ -0.47
HPS4-202ENST00000398145 CLGNO14967 610 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 SUN1O94901 812 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 EXOC3L4Q17RC7 722 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 TBC1D10CQ8IV04 446 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 TGFBRAP1Q8WUH2 860 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 ATP8A2Q9NTI2 1148 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 PSD3Q9NYI0 1048 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 SOS2Q07890 1332 aaPredicted RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 MAP3K15Q6ZN16 1313 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 CIB2O75838 187 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 MRPS25P82663 173 aaKnown RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 UAP1Q16222 522 aaPredicted RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 ARHGAP24Q8N264 748 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 LCORLQ8N3X6 602 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 MAIP1Q8WWC4 291 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 RAB3IPQ96QF0 476 aaPredicted RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 EYA3Q99504 573 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 TAF6LQ9Y6J9 622 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 ADGRB3O60242 1522 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 TTC26A0AVF1 554 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 CHMP2AO43633 222 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 HIBCHQ6NVY1 386 aaPredicted RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 RUNDC3BQ96NL0 473 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 DISC1Q9NRI5 854 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 ATP8A1Q9Y2Q0 1164 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 ARHGEF35A5YM69 484 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 GOLGA8HP0CJ92 632 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 HMGB2P26583 209 aaKnown RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 CDC27P30260 824 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 DHX9Q08211 1270 aaKnown RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 CUL4BQ13620 913 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 ANKRD20A3Q5VUR7 823 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 CCDC62Q6P9F0 684 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 CYB5R4Q7L1T6 521 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 CNKSR2Q8WXI2 1034 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 TCHPQ9BT92 498 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 DNAI2Q9GZS0 605 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 PIH1D3Q9NQM4 214 aaKnown RBP12.13□□□□□ -0.47
HPS4-202ENST00000398145 DAAM1Q9Y4D1 1078 aa12.13□□□□□ -0.47
HPS4-202ENST00000398145 PLA2G4AP47712 749 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 TC2NQ8N9U0 490 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 CNOT10Q9H9A5 744 aaKnown RBP12.12□□□□□ -0.47
HPS4-202ENST00000398145 VIPAS39Q9H9C1 493 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 HDAC6Q9UBN7 1215 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 UBN2Q6ZU65 1347 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 MCAMP43121 646 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 GSPT2Q8IYD1 628 aaKnown RBP12.12□□□□□ -0.47
HPS4-202ENST00000398145 SMCR8Q8TEV9 937 aaPredicted RBP12.12□□□□□ -0.47
HPS4-202ENST00000398145 TSNARE1Q96NA8 513 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 CCDC87Q9NVE4 849 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 NOVA2Q9UNW9 492 aaKnown RBP12.12□□□□□ -0.47
HPS4-202ENST00000398145 A0A1B0GTH6 734 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 PEX19P40855 299 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 SLC1A4P43007 532 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 PBKQ96KB5 322 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 FHOD1Q9Y613 1164 aa12.12□□□□□ -0.47
HPS4-202ENST00000398145 ZBTB21Q9ULJ3 1066 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 TARSL2A2RTX5 802 aaKnown RBP12.11□□□□□ -0.47
HPS4-202ENST00000398145 GUCY2CP25092 1073 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 RPS8P62241 208 aaKnown RBP12.11□□□□□ -0.47
HPS4-202ENST00000398145 WDR44Q5JSH3 913 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 KCNB2Q92953 911 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 STK17AQ9UEE5 414 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 COL4A3BPQ9Y5P4 624 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 ERBB3P21860 1342 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 FRMD3A2A2Y4 597 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 PRCPP42785 496 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 CHRNDQ07001 517 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 BIRC3Q13489 604 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 LIN9Q5TKA1 542 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 TRIM68Q6AZZ1 485 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 RASGRP2Q7LDG7 609 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 N4BP2L2Q92802 583 aaPredicted RBP12.11□□□□□ -0.47
HPS4-202ENST00000398145 MAGOHBQ96A72 148 aaKnown RBP12.11□□□□□ -0.47
HPS4-202ENST00000398145 KLHL29Q96CT2 875 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 ARHGEF40Q8TER5 1519 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 SALL3Q9BXA9 1300 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 LUC7L3O95232 432 aaKnown RBP12.11□□□□□ -0.47
HPS4-202ENST00000398145 TBC1D8O95759 1140 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 SERPING1P05155 500 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 PLCG1P19174 1290 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 CUL1Q13616 776 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 LRCH2Q5VUJ6 765 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 SGMS1Q86VZ5 419 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 RDH13Q8NBN7 331 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 LY9Q9HBG7 655 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 ADAMTS1Q9UHI8 967 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 ARAP3Q8WWN8 1544 aa12.11□□□□□ -0.47
HPS4-202ENST00000398145 FAM170AA1A519 330 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 TRIM49BA6NDI0 452 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 NR2F2P24468 414 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 PLTPP55058 493 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 FMR1Q06787 632 aaKnown RBP eCLIP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms