RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RNF146Q9NTX7 359 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-202ENST00000394943 UBIAD1Q9Y5Z9 338 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CST5P28325 142 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-202ENST00000394943 RGS2P41220 211 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 Q4G0T1 1027 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CTU1Q7Z7A3 348 aaKnown RBP8.09□□□□□ -1.11
LIMA1-202ENST00000394943 BICD2Q8TD16 824 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SENP7Q9BQF6 1050 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 RAVER2Q9HCJ3 691 aaKnown RBP8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CPA4Q9UI42 421 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CCPG1Q9ULG6 757 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SLC26A4O43511 780 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 CALML3P27482 149 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 HOXD10P28358 340 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 USP11P51784 963 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PPP4R3AQ6IN85 833 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 CLEC17AQ6ZS10 378 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 FBXO18Q8NFZ0 1043 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 MAFGO15525 162 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 ZNF865P0CJ78 1059 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 FCER1AP12319 257 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 TRAPPC10P48553 1259 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 ALDH5A1P51649 535 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 ZYXQ15942 572 aaKnown RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 FBXO46Q6PJ61 603 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 CPLX2Q6PUV4 134 aaKnown RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 UBE2Q1Q7Z7E8 422 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 DOCK3Q8IZD9 2030 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 NPLOC4Q8TAT6 608 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 INPP4AQ96PE3 977 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 MMP19Q99542 508 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 VTA1Q9NP79 307 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PAK6Q9NQU5 681 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PXMP2Q9NR77 195 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PCDHA6Q9UN73 950 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PCDHA8Q9Y5H6 950 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 NFASCO94856 1347 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 ALPK3Q96L96 1907 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 NFIBO00712 420 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 TAPT1Q6NXT6 567 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 CCDC62Q6P9F0 684 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 VSIG10LQ86VR7 867 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 NCOA5Q9HCD5 579 aaKnown RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 PCDHA1Q9Y5I3 950 aa8.08□□□□□ -1.12
LIMA1-202ENST00000394943 V9GY48 417 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-202ENST00000394943 IGLV3-22A0A075B6J6 115 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SNAI1O95863 264 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 ADORA2AP29274 412 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SLC30A10Q6XR72 485 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 LENG9Q96B70 501 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 NAP1L4Q99733 375 aaKnown RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 EFCC1Q9HA90 598 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 FLRT1Q9NZU1 646 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 LTBP2Q14767 1821 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 ASB14A6NK59 587 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 TRPA1O75762 1119 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 GNA11P29992 359 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 CCSAPQ6IQ19 270 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 TRIM22Q8IYM9 498 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 CUL5Q93034 780 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 NUDT12Q9BQG2 462 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SEC63Q9UGP8 760 aaKnown RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 TANC1Q9C0D5 1861 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 ADAMTS3O15072 1205 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 NKRFO15226 690 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 RGS20O76081 388 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 RPS6P62753 249 aaKnown RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 MKRN3Q13064 507 aaKnown RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 PGM5Q15124 567 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 CD99L2Q8TCZ2 262 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SMCR8Q8TEV9 937 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 ZNF333Q96JL9 665 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 ARHGAP39Q9C0H5 1083 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SLC5A4Q9NY91 659 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 GNEQ9Y223 722 aaKnown RBP8.07□□□□□ -1.12
LIMA1-202ENST00000394943 SCN10AQ9Y5Y9 1956 aa8.07□□□□□ -1.12
LIMA1-202ENST00000394943 GCOM1H8Y6P7 765 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 TBX3O15119 743 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 CTAGE5O15320 804 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ATG7O95352 703 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 POLR2MP0CAP2 368 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 TGFB3P10600 412 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 PSMC4P43686 418 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ATP2B2Q01814 1243 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KCNV1Q6PIU1 500 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 C4orf32Q8N8J7 132 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 NUP133Q8WUM0 1156 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 COA7Q96BR5 231 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 GPRASP2Q96D09 838 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 PDCD2LQ9BRP1 358 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 SEZ6LQ9BYH1 1024 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 GABRQQ9UN88 632 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 SPATA31C2B4DYI2 1134 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 HOXC8P31273 242 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ADCY7P51828 1080 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 MRPL12P52815 198 aaKnown RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 MAPK8IP2Q13387 824 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KIF22Q14807 665 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ATL3Q6DD88 541 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms