RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 LRRC37A2A6NM11 1700 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 ZNF536O15090 1300 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 TNKSO95271 1327 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 MUC3AQ02505 3323 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 B4DLN1 442 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 ICAM1P05362 532 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 MRPL12P52815 198 aaKnown RBP16.68■□□□□ 0.26
PTCH1-202ENST00000375271 DUSP28Q4G0W2 176 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 MUM1L1Q5H9M0 696 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 MIER1Q8N108 512 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 FAM122AQ96E09 287 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 MTG1Q9BT17 334 aaPredicted RBP16.68■□□□□ 0.26
PTCH1-202ENST00000375271 C1QTNF1Q9BXJ1 281 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 WDR11Q9BZH6 1224 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 WNT8AQ9H1J5 351 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 PNMA2Q9UL42 364 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 TTC41PQ6P2S7 1318 aa16.68■□□□□ 0.26
PTCH1-202ENST00000375271 RFC2P35250 354 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 CHMP4BP1P59074 171 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 PDE4DQ08499 809 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 PPP2R5BQ15173 497 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 TAPT1Q6NXT6 567 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 DCAF4Q8WV16 495 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 SLC9A7Q96T83 725 aa16.67■□□□□ 0.26
PTCH1-202ENST00000375271 TRMT13Q9NUP7 481 aaKnown RBP16.67■□□□□ 0.26
PTCH1-202ENST00000375271 LOC102724159A0A0B4J2E5 919 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 CA3P07451 260 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 CYP2C9P11712 490 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 MYOGP15173 224 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 CALML3P27482 149 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 KCNJ6P48051 423 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 ALDH5A1P51649 535 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-202ENST00000375271 BFSP2Q13515 415 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 BAATQ14032 418 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-202ENST00000375271 PWP2Q15269 919 aaKnown RBP16.66■□□□□ 0.26
PTCH1-202ENST00000375271 CCDC155Q8N6L0 562 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 SEC62Q99442 399 aaKnown RBP16.66■□□□□ 0.26
PTCH1-202ENST00000375271 DCTPP1Q9H773 170 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 DDX49Q9Y6V7 483 aaKnown RBP16.66■□□□□ 0.26
PTCH1-202ENST00000375271 GRIN2DO15399 1336 aa16.66■□□□□ 0.26
PTCH1-202ENST00000375271 NKRFO15226 690 aaKnown RBP eCLIP16.65■□□□□ 0.26
PTCH1-202ENST00000375271 KPNA6O60684 536 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 PTGS1P23219 599 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 CTDSPL2Q05D32 466 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 TTLL4Q14679 1199 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 RRP12Q5JTH9 1297 aaKnown RBP16.65■□□□□ 0.26
PTCH1-202ENST00000375271 SYDE2Q5VT97 1194 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 CERS4Q9HA82 394 aa16.65■□□□□ 0.26
PTCH1-202ENST00000375271 PURAQ00577 322 aaKnown RBP16.64■□□□□ 0.25
PTCH1-202ENST00000375271 ZMYM1Q5SVZ6 1142 aa16.64■□□□□ 0.25
PTCH1-202ENST00000375271 RNF207Q6ZRF8 634 aa16.64■□□□□ 0.25
PTCH1-202ENST00000375271 SCFD2Q8WU76 684 aa16.64■□□□□ 0.25
PTCH1-202ENST00000375271 ARNTL2Q8WYA1 636 aa16.64■□□□□ 0.25
PTCH1-202ENST00000375271 NMT2O60551 498 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 SLC16A2P36021 539 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 DIEXFQ68CQ4 756 aaKnown RBP16.63■□□□□ 0.25
PTCH1-202ENST00000375271 PHOSPHO2Q8TCD6 241 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 ZBED2Q9BTP6 218 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 RANBP17Q9H2T7 1088 aaKnown RBP16.63■□□□□ 0.25
PTCH1-202ENST00000375271 GPCPD1Q9NPB8 672 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 COG5Q9UP83 839 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 HCN4Q9Y3Q4 1203 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 FRMPD2Q68DX3 1309 aaPredicted RBP16.63■□□□□ 0.25
PTCH1-202ENST00000375271 CHD9Q3L8U1 2897 aa16.63■□□□□ 0.25
PTCH1-202ENST00000375271 PITPNM1O00562 1244 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 NFIBO00712 420 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 TOP1P11387 765 aaKnown RBP16.62■□□□□ 0.25
PTCH1-202ENST00000375271 PLA2G5P39877 138 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 TFF2Q03403 129 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 NBPF20Q3BBV1 942 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 C20orf194Q5TEA3 1177 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 NFRKBQ6P4R8 1299 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 MORC4Q8TE76 937 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 NECAB3Q96P71 396 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-202ENST00000375271 PURBQ96QR8 312 aaKnown RBP16.62■□□□□ 0.25
PTCH1-202ENST00000375271 CRBNQ96SW2 442 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 RAPGEFL1Q9UHV5 662 aa16.62■□□□□ 0.25
PTCH1-202ENST00000375271 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.62■□□□□ 0.25
PTCH1-202ENST00000375271 TCF20Q9UGU0 1960 aaKnown RBP16.62■□□□□ 0.25
PTCH1-202ENST00000375271 TLL1O43897 1013 aa16.61■□□□□ 0.25
PTCH1-202ENST00000375271 TXNP10599 105 aaKnown RBP16.61■□□□□ 0.25
PTCH1-202ENST00000375271 MX1P20591 662 aa16.61■□□□□ 0.25
PTCH1-202ENST00000375271 PTPN11Q06124 597 aaPredicted RBP16.61■□□□□ 0.25
PTCH1-202ENST00000375271 SLC30A10Q6XR72 485 aa16.61■□□□□ 0.25
PTCH1-202ENST00000375271 IL17RBQ9NRM6 502 aa16.61■□□□□ 0.25
PTCH1-202ENST00000375271 RFXAPO00287 272 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 BAIAP3O94812 1187 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 KCNQ1P51787 676 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 TMEM63BQ5T3F8 832 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 TTBK2Q6IQ55 1244 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 RASGRP2Q7LDG7 609 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 HERC6Q8IVU3 1022 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 DNERQ8NFT8 737 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 HLA-CQ95604 372 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 MTCH2Q9Y6C9 303 aa16.6■□□□□ 0.25
PTCH1-202ENST00000375271 TANC1Q9C0D5 1861 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 ORC4O43929 436 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 IQCF3P0C7M6 154 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 BMP1P13497 986 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 PTGISQ16647 500 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms