RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 HOXA7P31268 230 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 CATIPQ7Z7H3 387 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 TRIM22Q8IYM9 498 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 JMYQ8N9B5 988 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 SMCR8Q8TEV9 937 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 ATG4CQ96DT6 458 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 CGNQ9P2M7 1197 aaKnown RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 DDX41Q9UJV9 622 aaKnown RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 MORC2Q9Y6X9 1032 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 RLFQ13129 1914 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 A0A1B0GVL5 298 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 PPP6R2O75170 966 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 NDUFA8P51970 172 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 MAP2K1Q02750 393 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-203ENST00000374116 IQCB1Q15051 598 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 CCDC82Q8N4S0 544 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 ANKRD13CQ8N6S4 541 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 GMCL1Q96IK5 515 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 SDF4Q9BRK5 362 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 PAGR1Q9BTK6 254 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 TXNRD2Q9NNW7 524 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 WBP1LQ9NX94 342 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 MAD2L2Q9UI95 211 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 PARP14Q460N5 1801 aa16.23■□□□□ 0.19
HMGA1-203ENST00000374116 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 SPDYE16A6NNV3 312 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 GOLGA6L19H0YKK7 550 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 DEXIO95424 95 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 SLFN14P0C7P3 912 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 SNHG28P0DPA3 235 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 TAL1P17542 331 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 OSBPP22059 807 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 HERVK_113P62684 666 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 ZNF543Q08ER8 600 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 NCBP1Q09161 790 aaKnown RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 AXDND1Q5T1B0 1012 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 ZNF771Q7L3S4 317 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 PLA2G4DQ86XP0 818 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 ZNF830Q96NB3 372 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 RNF26Q9BY78 433 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 VAT1LQ9HCJ6 419 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 CA12O43570 354 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 DDAH1O94760 285 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 PARP1P09874 1014 aaKnown RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 ZNF75DP51815 510 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 STAT2P52630 851 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 COG2Q14746 738 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 DCAF4Q8WV16 495 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 BEGAINQ9BUH8 593 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 TRIM5Q9C035 493 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 NAT10Q9H0A0 1025 aaKnown RBP16.22■□□□□ 0.19
HMGA1-203ENST00000374116 SYNPO2Q9UMS6 1093 aa16.22■□□□□ 0.19
HMGA1-203ENST00000374116 COL11A1P12107 1806 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-203ENST00000374116 PLEKHA8P1O95397 391 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 MMP1P03956 469 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 PABPC4Q13310 644 aaKnown RBP eCLIP16.21■□□□□ 0.191e-21■■■□□ 15.2
HMGA1-203ENST00000374116 SAFBQ15424 915 aaKnown RBP eCLIP16.21■□□□□ 0.19
HMGA1-203ENST00000374116 SLC35G1Q2M3R5 365 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 Q3C1V9 767 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 SARM1Q6SZW1 724 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 C11orf57Q6ZUT1 292 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-203ENST00000374116 PARK7Q99497 189 aaKnown RBP16.21■□□□□ 0.19
HMGA1-203ENST00000374116 MAP3K14Q99558 947 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 SLF1Q9BQI6 1058 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 KCNF1Q9H3M0 494 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 ZFYVE28Q9HCC9 887 aa16.21■□□□□ 0.19
HMGA1-203ENST00000374116 SMTNL1A8MU46 457 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 KLRF2D3W0D1 207 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 CALM1P0DP23 149 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 CALM2P0DP24 149 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 CALM3P0DP25 149 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 CDC25BP30305 580 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 DSG3P32926 999 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 GRM4Q14833 912 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 PTPAQ15257 358 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 PKN1Q16512 942 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 REM2Q8IYK8 340 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-203ENST00000374116 CEP57L1Q8IYX8 460 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 SPC24Q8NBT2 197 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 TIGD1Q96MW7 591 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 RBM28Q9NW13 759 aaKnown RBP16.2■□□□□ 0.18
HMGA1-203ENST00000374116 BTBD7Q9P203 1132 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 KIAA1468Q9P260 1216 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 RBPJLQ9UBG7 517 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 PNMA3Q9UL41 463 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 PPP1R9AQ9ULJ8 1098 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 SMCHD1A6NHR9 2005 aa16.2■□□□□ 0.18
HMGA1-203ENST00000374116 hCG_1642624A0A1W2PR95 340 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 PRPF3O43395 683 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 TLR2O60603 784 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 ZNF202O95125 648 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 ALDH1A1P00352 501 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 PLS1Q14651 629 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 CCDC174Q6PII3 467 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 CPXCR1Q8N123 301 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 C17orf53Q8N3J3 647 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
HMGA1-203ENST00000374116 FOXP1Q9H334 677 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.19■□□□□ 0.18
HMGA1-203ENST00000374116 FEM1BQ9UK73 627 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms