RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 CCDC43Q96MW1 224 aaKnown RBP11.28□□□□□ -0.6
PTPRA-203ENST00000356147 SHOX2O60902 331 aaPredicted RBP11.27□□□□□ -0.6
PTPRA-203ENST00000356147 FTCDO95954 541 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 GLI1P08151 1106 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 HNRNPH1P31943 449 aaKnown RBP11.27□□□□□ -0.6
PTPRA-203ENST00000356147 LONP1P36776 959 aaKnown RBP11.27□□□□□ -0.6
PTPRA-203ENST00000356147 TECP42680 631 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 TXNRD1Q16881 649 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 C8orf74Q6P047 294 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 MMS22LQ6ZRQ5 1243 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 MTMR8Q96EF0 704 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 DYNLL2Q96FJ2 89 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 THAP9Q9H5L6 903 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 TFCP2L1Q9NZI6 479 aa11.27□□□□□ -0.6
PTPRA-203ENST00000356147 LRRC53A6NM62 1247 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 H0YHG0 523 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 USP17L8P0C7I0 530 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 GUCY2DQ02846 1103 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 TDRD12Q587J7 1177 aaKnown RBP11.27□□□□□ -0.61
PTPRA-203ENST00000356147 RNPC3Q96LT9 517 aaKnown RBP11.27□□□□□ -0.61
PTPRA-203ENST00000356147 GOLPH3Q9H4A6 298 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 VAT1LQ9HCJ6 419 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 EPB41L5Q9HCM4 733 aa11.27□□□□□ -0.61
PTPRA-203ENST00000356147 USP17L3A6NCW0 530 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 USP17L4A6NCW7 530 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 HPDP32754 393 aaPredicted RBP11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SLC1A4P43007 532 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 MAGEA1P43355 309 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 NNTQ13423 1086 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 USP17L1Q7RTZ2 530 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 DHX37Q8IY37 1157 aaKnown RBP11.26□□□□□ -0.61
PTPRA-203ENST00000356147 RPGRIP1Q96KN7 1286 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 TANGO6Q9C0B7 1094 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SH2D4AQ9H788 454 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 ALS2Q96Q42 1657 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 TNS2Q63HR2 1409 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 USO1O60763 962 aaKnown RBP11.26□□□□□ -0.61
PTPRA-203ENST00000356147 HSF2BPO75031 334 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SLC35G1Q2M3R5 365 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 RNF187Q5TA31 235 aaPredicted RBP11.26□□□□□ -0.61
PTPRA-203ENST00000356147 C3orf67Q6ZVT6 689 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 CABP7Q86V35 215 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SLC44A5Q8NCS7 719 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SEMA6BQ9H3T3 888 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 STIM2Q9P246 746 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 RHOBTB3O94955 611 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 PRDX5P30044 214 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 BICDL1Q6ZP65 573 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 SLC51AQ86UW1 340 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 AMOTL1Q8IY63 956 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 KIAA0895Q8NCT3 520 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 TRIM58Q8NG06 486 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 TRIM9Q9C026 710 aa11.26□□□□□ -0.61
PTPRA-203ENST00000356147 NIP7Q9Y221 180 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTPRA-203ENST00000356147 CCNT1O60563 726 aaKnown RBP11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CCNE1P24864 410 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 RCAN1P53805 252 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 TFAP4Q01664 338 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 RCSD1Q6JBY9 416 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 ZNF34Q8IZ26 560 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 OR2W6PQ8NHA6 318 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 PURBQ96QR8 312 aaKnown RBP11.25□□□□□ -0.61
PTPRA-203ENST00000356147 KBTBD4Q9NVX7 518 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 MCM9Q9NXL9 1143 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 ANAPC4Q9UJX5 808 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 PCDHA6Q9UN73 950 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 STX8Q9UNK0 236 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 PCDHA8Q9Y5H6 950 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 ANO9A1A5B4 782 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 DDAH1O94760 285 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 HEXIM1O94992 359 aaKnown RBP11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CALM1P0DP23 149 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CALM2P0DP24 149 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CALM3P0DP25 149 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 PPP2R5BQ15173 497 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 IQCEQ6IPM2 695 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 KLHL7Q8IXQ5 586 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CCDC170Q8IYT3 715 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 MMGT1Q8N4V1 131 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 GJA10Q969M2 543 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 KRT12Q99456 494 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 CARD10Q9BWT7 1032 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 TLR10Q9BXR5 811 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 PCDHA4Q9UN74 947 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 SLIT2O94813 1529 aa11.25□□□□□ -0.61
PTPRA-203ENST00000356147 ZNF233A6NK53 670 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 CYTH3O43739 400 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 ATP2C2O75185 946 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 PAFAH1B1P43034 410 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 MCTP2Q6DN12 878 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 SH3GL2Q99962 352 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 DCP1AQ9NPI6 582 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 HYOU1Q9Y4L1 999 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 COL1A1P02452 1464 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 TXKP42681 527 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 TRAPPC10P48553 1259 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 CCDC152Q4G0S7 254 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 CFAP58Q5T655 872 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 ARL6IP4Q66PJ3 421 aaKnown RBP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 CACNA2D4Q7Z3S7 1137 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms