RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 NOSTRINQ8IVI9 506 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 REXO1Q8N1G1 1221 aaKnown RBP21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 GPRC5AQ8NFJ5 357 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 PORCNQ9H237 461 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 BRMS1Q9HCU9 246 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 COL20A1Q9P218 1284 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 PIK3CDO00329 1044 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 HSPA1AP0DMV8 641 aaKnown RBP21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 HSPA1BP0DMV9 641 aaKnown RBP21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 ERCC3P19447 782 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 GHRHRQ02643 423 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 GNL2Q13823 731 aaKnown RBP21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 SLC30A10Q6XR72 485 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 NCAPG2Q86XI2 1143 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 BICD2Q8TD16 824 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 ZSCAN16Q9H4T2 348 aaPredicted RBP21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 ACAD9Q9H845 621 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 EFCC1Q9HA90 598 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 MYH7BA7E2Y1 1941 aa21.76■■□□□ 1.07
CHMP4A-201ENST00000347519 GCOM1H8Y6P7 765 aaPredicted RBP21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 WNT7AO00755 349 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 POLR2MP0CAP2 368 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 MAP2K2P36507 400 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 HSD17B4P51659 736 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 C17orf99Q6UX52 265 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 PIK3AP1Q6ZUJ8 805 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 CHST13Q8NET6 341 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 PURBQ96QR8 312 aaKnown RBP21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 ZFYVE28Q9HCC9 887 aa21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 ZNFX1Q9P2E3 1918 aaKnown RBP21.75■■□□□ 1.07
CHMP4A-201ENST00000347519 CA12O43570 354 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 EDIL3O43854 480 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 TLR2O60603 784 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 SLC25A27O95847 323 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 TOB1P50616 345 aaPredicted RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 NSMFQ6X4W1 530 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 BRAPQ7Z569 592 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 FCHSD1Q86WN1 690 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 GLT8D2Q9H1C3 349 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 A1CFQ9NQ94 594 aaKnown RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 PLXNB2O15031 1838 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 RPS6P62753 249 aaKnown RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 BAATQ14032 418 aaPredicted RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 FAM110CQ1W6H9 321 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 MYSM1Q5VVJ2 828 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 MCF2L2Q86YR7 1114 aa21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 REM2Q8IYK8 340 aaPredicted RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 SYTL5Q8TDW5 730 aaPredicted RBP21.74■■□□□ 1.07
CHMP4A-201ENST00000347519 FTOQ9C0B1 505 aaKnown RBP eCLIP21.74■■□□□ 1.071e-12■■■■□ 25.8
CHMP4A-201ENST00000347519 DNM1Q05193 864 aaKnown RBP21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 NBR1Q14596 966 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 INF2Q27J81 1249 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 RNF207Q6ZRF8 634 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 KRT25Q7Z3Z0 450 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 SHCBP1Q8NEM2 672 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 ANO3Q9BYT9 981 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 CYP39A1Q9NYL5 469 aa21.73■■□□□ 1.07
CHMP4A-201ENST00000347519 ZSWIM8A7E2V4 1837 aa21.72■■□□□ 1.07
CHMP4A-201ENST00000347519 CCDC194A0A1B0GVG4 234 aa21.72■■□□□ 1.07
CHMP4A-201ENST00000347519 TAAR1Q96RJ0 339 aa21.72■■□□□ 1.07
CHMP4A-201ENST00000347519 TFIP11Q9UBB9 837 aaKnown RBP21.72■■□□□ 1.07
CHMP4A-201ENST00000347519 ECM2O94769 699 aaPredicted RBP21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 TBC1D8O95759 1140 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 ALDH1A1P00352 501 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 ATP2B1P20020 1258 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 COPB2P35606 906 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 AP3B2Q13367 1082 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 NONOQ15233 471 aaKnown RBP eCLIP21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 WDR78Q5VTH9 848 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 TBCKQ8TEA7 893 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 MROH8Q9H579 483 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 RNF186Q9NXI6 227 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 FBXO40Q9UH90 709 aa21.71■■□□□ 1.07
CHMP4A-201ENST00000347519 CCNA1P78396 465 aa21.7■■□□□ 1.06
CHMP4A-201ENST00000347519 USP28Q96RU2 1077 aa21.7■■□□□ 1.06
CHMP4A-201ENST00000347519 MGAMO43451 1857 aa21.7■■□□□ 1.06
CHMP4A-201ENST00000347519 DOCK3Q8IZD9 2030 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 SPDYE3A6NKU9 549 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 TRPA1O75762 1119 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 BAG4O95429 457 aaKnown RBP21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 UBXN2AP68543 259 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 CNTN2Q02246 1040 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 ANKRD35Q8N283 1001 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 SAMD3Q8N6K7 520 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 CRYGNQ8WXF5 182 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 MMP19Q99542 508 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 MAP3K20Q9NYL2 800 aaKnown RBP21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 CNPY2Q9Y2B0 182 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 PCDHB6Q9Y5E3 794 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 CLIC4Q9Y696 253 aa21.69■■□□□ 1.06
CHMP4A-201ENST00000347519 ASTN1O14525 1302 aa21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 RPTORQ8N122 1335 aa21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 FOSP01100 380 aaPredicted RBP21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 CTGFP29279 349 aa21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 TEX2Q8IWB9 1127 aa21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 IL31RAQ8NI17 732 aa21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 DDX49Q9Y6V7 483 aaKnown RBP21.68■■□□□ 1.06
CHMP4A-201ENST00000347519 PLXNA1Q9UIW2 1896 aa21.67■■□□□ 1.06
CHMP4A-201ENST00000347519 PGK2P07205 417 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms