RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 FBXO11Q86XK2 927 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 ARRDC4Q8NCT1 418 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 RGS22Q8NE09 1264 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 NEK1Q96PY6 1258 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 MAP3K14Q99558 947 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 XPNPEP3Q9NQH7 507 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 FAM184BQ9ULE4 1060 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 MYH6P13533 1939 aa17.76■□□□□ 0.43
PRKN-201ENST00000338468 BAZ2BQ9UIF8 2168 aaKnown RBP17.75■□□□□ 0.43
PRKN-201ENST00000338468 ZBTB5O15062 677 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 ADAMTS4O75173 837 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 CALML3P27482 149 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 HSPA4P34932 840 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 ALDH5A1P51649 535 aaPredicted RBP17.75■□□□□ 0.43
PRKN-201ENST00000338468 LRRC26Q2I0M4 334 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 CCDC144BQ3MJ40 725 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 NUP133Q8WUM0 1156 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 TCEANC2Q96MN5 208 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 PIGSQ96S52 555 aa17.75■□□□□ 0.43
PRKN-201ENST00000338468 SYNRGQ9UMZ2 1314 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.74■□□□□ 0.43
PRKN-201ENST00000338468 IRX5P78411 483 aaPredicted RBP17.74■□□□□ 0.43
PRKN-201ENST00000338468 TAPT1Q6NXT6 567 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 SGMS1Q86VZ5 419 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 TMTC2Q8N394 836 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 SENP6Q9GZR1 1112 aaPredicted RBP17.74■□□□□ 0.43
PRKN-201ENST00000338468 COL20A1Q9P218 1284 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 SNX14Q9Y5W7 946 aa17.74■□□□□ 0.43
PRKN-201ENST00000338468 MYADML2A6NDP7 307 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 DUSP11O75319 330 aaKnown RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 RXRAP19793 462 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 PTGS1P23219 599 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 EDNRBP24530 442 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 MDM2Q00987 491 aaPredicted RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 TMEM63BQ5T3F8 832 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 DHX32Q7L7V1 743 aaKnown RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 HOMER1Q86YM7 354 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 RAB11FIP4Q86YS3 637 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 FBXO16Q8IX29 292 aaPredicted RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 KLHDC9Q8NEP7 349 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 SYTL5Q8TDW5 730 aaPredicted RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 AMNQ9BXJ7 453 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 PDGFCQ9NRA1 345 aa17.73■□□□□ 0.43
PRKN-201ENST00000338468 ADD3Q9UEY8 706 aaKnown RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 MRPL11Q9Y3B7 192 aaKnown RBP17.73■□□□□ 0.43
PRKN-201ENST00000338468 LOC102724159A0A0B4J2E5 919 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 CCDC69A6NI79 296 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 KBTBD13C9JR72 458 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 CTAGE5O15320 804 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 REC8O95072 547 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 PLEKHA8P1O95397 391 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 MYCNP04198 464 aaPredicted RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 CPA1P15085 419 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 ADCYAP1R1P41586 468 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 GHRHRQ02643 423 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 KRT32Q14532 448 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 PWP2Q15269 919 aaKnown RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 CCSAPQ6IQ19 270 aaPredicted RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 NFXL1Q6ZNB6 911 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 EEPD1Q7L9B9 569 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.72■□□□□ 0.43
PRKN-201ENST00000338468 DNERQ8NFT8 737 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 LBHD1Q9BQE6 289 aaPredicted RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 SPZ1Q9BXG8 430 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 COL25A1Q9BXS0 654 aaPredicted RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 MAF1Q9H063 256 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 UPF3AQ9H1J1 476 aaKnown RBP17.72■□□□□ 0.43
PRKN-201ENST00000338468 PHF24Q9UPV7 400 aa17.72■□□□□ 0.43
PRKN-201ENST00000338468 LAMA2P24043 3122 aaKnown RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 PNMA6FA0A0J9YX94 578 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 SMPD1P17405 629 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 ATN1P54259 1190 aaPredicted RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 FAM109BQ6ICB4 259 aaPredicted RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 RNF180Q86T96 592 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 SRBD1Q8N5C6 995 aaKnown RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 CTCFLQ8NI51 663 aaPredicted RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 TAAR1Q96RJ0 339 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 BRPF3Q9ULD4 1205 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 GNEQ9Y223 722 aaKnown RBP17.71■□□□□ 0.43
PRKN-201ENST00000338468 PCDHA1Q9Y5I3 950 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 SLC12A7Q9Y666 1083 aa17.71■□□□□ 0.43
PRKN-201ENST00000338468 SMARCA1P28370 1054 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 KIF5BP33176 963 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 HSD17B4P51659 736 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 GJA9P57773 515 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 NKX3-2P78367 333 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 TNFAIP2Q03169 654 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 APOA5Q6Q788 366 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 MCF2L2Q86YR7 1114 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 CMTR1Q8N1G2 835 aaKnown RBP17.7■□□□□ 0.42
PRKN-201ENST00000338468 PIBF1Q8WXW3 757 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 FERMT2Q96AC1 680 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 USP26Q9BXU7 913 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 VTA1Q9NP79 307 aa17.7■□□□□ 0.42
PRKN-201ENST00000338468 RBM47A0AV96 593 aaKnown RBP17.69■□□□□ 0.42
PRKN-201ENST00000338468 EPB41L2O43491 1005 aaKnown RBP17.69■□□□□ 0.42
PRKN-201ENST00000338468 CALM1P0DP23 149 aa17.69■□□□□ 0.42
PRKN-201ENST00000338468 CALM2P0DP24 149 aa17.69■□□□□ 0.42
PRKN-201ENST00000338468 CALM3P0DP25 149 aa17.69■□□□□ 0.42
PRKN-201ENST00000338468 CST5P28325 142 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms