RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ZNF233A6NK53 670 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 KLHL30Q0D2K2 578 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 LRRC24Q50LG9 513 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 CFAP157Q5JU67 520 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 CACTINQ8WUQ7 758 aaKnown RBP13.99□□□□□ -0.17
USP40-201ENST00000251722 NKIRAS1Q9NYS0 192 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 PCDHA4Q9UN74 947 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 CPLX4Q7Z7G2 160 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 MED14O60244 1454 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 ASNSP08243 561 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 STAT2P52630 851 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 ELF2Q15723 593 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 METTL23Q86XA0 190 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 FAM178BQ8IXR5 827 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 GSDMBQ8TAX9 411 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 PHKBQ93100 1093 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 DNAJC5Q9H3Z4 198 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 GIPC1O14908 333 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 HOXD10P28358 340 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 PHKA1P46020 1223 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 FANCCQ00597 558 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 TMEM179Q6ZVK1 233 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 RUNDC3BQ96NL0 473 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 DONSONQ9NYP3 566 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 SAMD15Q9P1V8 674 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 FGAP02671 866 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 CMA1P23946 247 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 STAT1P42224 750 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 CDC37Q16543 378 aaPredicted RBP13.98□□□□□ -0.17
USP40-201ENST00000251722 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 ABI1Q8IZP0 508 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 BRIP1Q9BX63 1249 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 TRPM1Q7Z4N2 1603 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 IQCA1LA6NCM1 817 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 K7ENM7 598 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 ARHGAP6O43182 974 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 GUCY2CP25092 1073 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 EVCP57679 992 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 ITIH3Q06033 890 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 GRK7Q8WTQ7 553 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 STK17AQ9UEE5 414 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 PRR36Q9H6K5 1346 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 EIF3CLB5ME19 914 aaKnown RBP13.98□□□□□ -0.17
USP40-201ENST00000251722 TMEM191BP0C7N4 346 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 RANBP1P43487 201 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 SYDE2Q5VT97 1194 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 SLC7A3Q8WY07 619 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 SLC10A4Q96EP9 437 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 EIF3CQ99613 913 aaKnown RBP13.98□□□□□ -0.17
USP40-201ENST00000251722 ZNF341Q9BYN7 854 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 PPP1R12CQ9BZL4 782 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 TMEM206Q9H813 350 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 SH3GLB2Q9NR46 395 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 CHCHD3Q9NX63 227 aaKnown RBP13.98□□□□□ -0.17
USP40-201ENST00000251722 RFC1P35251 1148 aaPredicted RBP13.98□□□□□ -0.17
USP40-201ENST00000251722 MTMR3Q13615 1198 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 SLC24A3Q9HC58 644 aa13.98□□□□□ -0.17
USP40-201ENST00000251722 FMNL1O95466 1100 aaPredicted RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 RWDD2BP57060 319 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 ORC2Q13416 577 aaPredicted RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 LRRC47Q8N1G4 583 aaKnown RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 OTUD7AQ8TE49 926 aaPredicted RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 TSPYL2Q9H2G4 693 aaPredicted RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 PANK4Q9NVE7 773 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 BZW2Q9Y6E2 419 aaKnown RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 RGS12O14924 1447 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 RCAN1P53805 252 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 SYT10Q6XYQ8 523 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 IFT20Q8IY31 132 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 EXOC4Q96A65 974 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 ARMCX3Q9UH62 379 aaPredicted RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 ALKQ9UM73 1620 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 TYW5A2RUC4 315 aaKnown RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 H7C1W4 665 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 USP17L8P0C7I0 530 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 GNAT1P11488 350 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 RAD51AP2Q09MP3 1159 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 FAM167AQ96KS9 214 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 MED10Q9BTT4 135 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 VPS16Q9H269 839 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 LRFN2Q9ULH4 789 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 SETBP1Q9Y6X0 1596 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 COL15A1P39059 1388 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 CRCPO75575 148 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 SLC20A2Q08357 652 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 DYMQ7RTS9 669 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 MAP4K1Q92918 833 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 KCNJ14Q9UNX9 436 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 KRT10P13645 584 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 MAGEA1P43355 309 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 ZBTB16Q05516 673 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 AP3B2Q13367 1082 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 SETDB1Q15047 1291 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 RC3H1Q5TC82 1133 aaKnown RBP13.97□□□□□ -0.17
USP40-201ENST00000251722 PPP1R18Q6NYC8 613 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 BBS5Q8N3I7 341 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 TSC22D3Q99576 134 aa13.97□□□□□ -0.17
USP40-201ENST00000251722 PPP6R2O75170 966 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 MMP10P09238 476 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 HSP90AA4PQ58FG1 418 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms