RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 KIAA0754O94854 1291 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 APBA3O96018 575 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 SFMBT2Q5VUG0 894 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 SMCR8Q8TEV9 937 aaPredicted RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 LSM14BQ9BX40 385 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 MED1Q15648 1581 aaPredicted RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 ZMYND10O75800 440 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 EPB41P11171 864 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 KRT13P13646 458 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 KCNJ6P48051 423 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 POLR2FP61218 127 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 NEDD1Q8NHV4 660 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 TBC1D5Q92609 795 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 HPS3Q969F9 1004 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 RSPH14Q9UHP6 348 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 PCDHA6Q9UN73 950 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 PCDHA8Q9Y5H6 950 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 TNS2Q63HR2 1409 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 SHTN1A0MZ66 631 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 DDX39AO00148 427 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 IFFO1Q0D2I5 559 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 PABPC4Q13310 644 aaKnown RBP eCLIP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 ASIC2Q16515 512 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 UTP14CQ5TAP6 766 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 C8orf74Q6P047 294 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 CCDC174Q6PII3 467 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 POTEDQ86YR6 584 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 TPH2Q8IWU9 490 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 THAP9Q9H5L6 903 aa13.69□□□□□ -0.22
TM9SF4-201ENST00000217315 LGALS16A8MUM7 142 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 GDF11O95390 407 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 SETQ01105 290 aaPredicted RBP13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 PTPROQ16827 1216 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 FAM107BQ9H098 131 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 KDM3AQ9Y4C1 1321 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 FBXO11Q86XK2 927 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 NLGN1Q8N2Q7 840 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 RGS22Q8NE09 1264 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 TRIM58Q8NG06 486 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 CCDC17Q96LX7 622 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 SELENOOQ9BVL4 669 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 STK17AQ9UEE5 414 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 ZBED6P86452 979 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 DMTNQ08495 405 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 ADAM9Q13443 819 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 RAD9BQ6WBX8 426 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 CPXCR1Q8N123 301 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 MYCT1Q8N699 235 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 QTRT2Q9H974 415 aaKnown RBP13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 ARHGEF10LQ9HCE6 1279 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 TDP2O95551 362 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 FCER1AP12319 257 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 RASA1P20936 1047 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 PDE6BP35913 854 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 TAX1BP1Q86VP1 789 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 KIFC2Q96AC6 838 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 CHP1Q99653 195 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 PDE11AQ9HCR9 933 aa13.68□□□□□ -0.22
TM9SF4-201ENST00000217315 CHD2O14647 1828 aaKnown RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 PLEKHG2Q9H7P9 1386 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 MEIS1O00470 390 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 SNAP25P60880 206 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 FKBP3Q00688 224 aaKnown RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 PRR5LQ6MZQ0 368 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 SND1Q7KZF4 910 aaKnown RBP eCLIP13.67□□□□□ -0.225e-10■■■□□ 16.8
TM9SF4-201ENST00000217315 RDH13Q8NBN7 331 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 NDST4Q9H3R1 872 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 CCDC151A5D8V7 595 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L15C9J2P7 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L13C9JLJ4 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L11C9JVI0 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L18D6R9N7 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L22D6RA61 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L17D6RBQ6 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L19D6RCP7 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L20D6RJB6 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 SP4Q02446 784 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L24Q0WX57 530 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 MAN2A1Q16706 1144 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 RC3H1Q5TC82 1133 aaKnown RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 USP17L6PQ6QN14 398 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 RETREG2Q8NC44 543 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 NHEJ1Q9H9Q4 299 aaPredicted RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 MYO1AQ9UBC5 1043 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 ARMCX3Q9UH62 379 aaPredicted RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 PPIP5K2O43314 1243 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 CCDC172P0C7W6 258 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 AKR1B1P15121 316 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 BARGINQ6ZT62 677 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 NKX2-3Q8TAU0 364 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 DDX12PQ92771 950 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 CCDC113Q9H0I3 377 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 SWAP70Q9UH65 585 aa13.67□□□□□ -0.22
TM9SF4-201ENST00000217315 PNMA6FA0A0J9YX94 578 aa13.66□□□□□ -0.22
TM9SF4-201ENST00000217315 RASSF7Q02833 373 aa13.66□□□□□ -0.22
TM9SF4-201ENST00000217315 ABCB5Q2M3G0 1257 aa13.66□□□□□ -0.22
TM9SF4-201ENST00000217315 AMNQ9BXJ7 453 aa13.66□□□□□ -0.22
TM9SF4-201ENST00000217315 COA1Q9GZY4 146 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms