RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CAPN11Q9UMQ6 739 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 PPP1R11O60927 126 aaPredicted RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 RCAN1P53805 252 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 TTBK2Q6IQ55 1244 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 NBPF5PQ86XG9 351 aaPredicted RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 PNMA5Q96PV4 448 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 CTAGE1Q96RT6 745 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 CRNKL1Q9BZJ0 848 aaKnown RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 TTF2Q9UNY4 1162 aaKnown RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 F8W031 263 aaPredicted RBP11.96□□□□□ -0.5
USP28-201ENST00000003302 MYO1CO00159 1063 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 RNF40O75150 1001 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 RHOBTB3O94955 611 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 TSPY3P0CV98 308 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 TSPY8P0CW00 308 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 SLC16A2P36021 539 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 TNNT3P45378 269 aaPredicted RBP11.96□□□□□ -0.5
USP28-201ENST00000003302 C2CD5Q86YS7 1000 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 CREG2Q8IUH2 290 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 NAA15Q9BXJ9 866 aaKnown RBP11.96□□□□□ -0.5
USP28-201ENST00000003302 BRMS1Q9HCU9 246 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 BARHL2Q9NY43 387 aa11.96□□□□□ -0.5
USP28-201ENST00000003302 LAMB1P07942 1786 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 GNPATO15228 680 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 TUBB4AP04350 444 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 SRGNP10124 158 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 CABP7Q86V35 215 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 LRRC4CQ9HCJ2 640 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 NLRC4Q9NPP4 1024 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 JADE2Q9NQC1 790 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 SBF2Q86WG5 1849 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 USP14P54578 494 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 GRB10Q13322 594 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 BRD3Q15059 726 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 PCMTD1Q96MG8 357 aaPredicted RBP11.95□□□□□ -0.5
USP28-201ENST00000003302 P2RX7Q99572 595 aaKnown RBP11.95□□□□□ -0.5
USP28-201ENST00000003302 PACSIN1Q9BY11 444 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 ANKIB1Q9P2G1 1089 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 PALM3A6NDB9 673 aaPredicted RBP11.95□□□□□ -0.5
USP28-201ENST00000003302 SMCO2A6NFE2 343 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 SNAP25P60880 206 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 AK7Q96M32 723 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 HPCAL4Q9UM19 191 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 SAR1BQ9Y6B6 198 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 DDX60LQ5H9U9 1706 aaKnown RBP11.95□□□□□ -0.5
USP28-201ENST00000003302 TLR2O60603 784 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 HNRNPLLQ8WVV9 542 aaKnown RBP11.95□□□□□ -0.5
USP28-201ENST00000003302 CDK5RAP2Q96SN8 1893 aa11.95□□□□□ -0.5
USP28-201ENST00000003302 PSMD14O00487 310 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 LONP1P36776 959 aaKnown RBP11.94□□□□□ -0.5
USP28-201ENST00000003302 ARID5AQ03989 594 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 MEA1Q16626 185 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 TMED8Q6PL24 325 aaPredicted RBP11.94□□□□□ -0.5
USP28-201ENST00000003302 SH2D3CQ8N5H7 860 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 CEP112Q8N8E3 955 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 NOC4LQ9BVI4 516 aaKnown RBP11.94□□□□□ -0.5
USP28-201ENST00000003302 PODXL2Q9NZ53 605 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 LRRC53A6NM62 1247 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 SEMA3EO15041 775 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 IDEP14735 1019 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 NAPAP54920 295 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 GRM4Q14833 912 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 HDXQ7Z353 690 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 CCDC66A2RUB6 948 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 H7C1D1 291 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 CERS3Q8IU89 383 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 ARHGEF1Q92888 912 aaKnown RBP11.94□□□□□ -0.5
USP28-201ENST00000003302 MTA3Q9BTC8 594 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 WNK3Q9BYP7 1800 aa11.94□□□□□ -0.5
USP28-201ENST00000003302 FAM153BP0C7A2 387 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 SLC1A4P43007 532 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 FAM153CQ494X1 144 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 KIAA1328Q86T90 577 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 P2RX5Q93086 422 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 RTFDC1Q9BY42 306 aaPredicted RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 ATP8A2Q9NTI2 1148 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 FAM153AQ9UHL3 310 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 COL22A1Q8NFW1 1626 aaPredicted RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 EIF4A3P38919 411 aaKnown RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 MTIF2P46199 727 aaKnown RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 KCNMA1Q12791 1236 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 PICALMQ13492 652 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 PLCD3Q8N3E9 789 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 EXOC1Q9NV70 894 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 BCS1LQ9Y276 419 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 ARL8AQ96BM9 186 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 SELENOOQ9BVL4 669 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 MMRN2Q9H8L6 949 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 SIK3Q9Y2K2 1263 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 CDK8P49336 464 aa11.93□□□□□ -0.5
USP28-201ENST00000003302 PAPD7Q5XG87 772 aaKnown RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 DDX4Q9NQI0 724 aaKnown RBP11.93□□□□□ -0.5
USP28-201ENST00000003302 CALM1P0DP23 149 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CALM2P0DP24 149 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CALM3P0DP25 149 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 ACTN2P35609 894 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 ARL6IP4Q66PJ3 421 aaKnown RBP11.92□□□□□ -0.5
USP28-201ENST00000003302 NELFCDQ8IXH7 590 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 CALCOCO1Q9P1Z2 691 aa11.92□□□□□ -0.5
USP28-201ENST00000003302 ARPP21Q9UBL0 812 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms