RNA–Protein interactions for RNA: YLR306W

UBC12, Transcript of Enzyme that mediates the conjugation of Rub1p, yeast

Gene UBC12, Length 567 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC12	YLR306W	RER1	P25560	188 aa		4.2	□□□□□ -1.74
UBC12	YLR306W	KTR3	P38130	404 aa	Predicted RBP	4.2	□□□□□ -1.74
UBC12	YLR306W	PRE5	P40302	234 aa	Known RBP	4.2	□□□□□ -1.74
UBC12	YLR306W	MSO1	P53604	210 aa	Known RBP	4.2	□□□□□ -1.74
UBC12	YLR306W	RLI1	Q03195	608 aa	Known RBP	4.2	□□□□□ -1.74
UBC12	YLR306W	HNT3	Q08702	217 aa		4.2	□□□□□ -1.74
UBC12	YLR306W	YOL087C	Q99247	1116 aa		4.2	□□□□□ -1.74
UBC12	YLR306W	PEP5	P12868	1029 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	VMA16	P23968	213 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	YCR022C	P25620	114 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	CBF2	P32504	956 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	PTH2	P34222	208 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	HEL2	Q05580	639 aa	Known RBP	4.19	□□□□□ -1.74
UBC12	YLR306W	NBP2	Q12163	236 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	SSM4	P40318	1319 aa		4.19	□□□□□ -1.74
UBC12	YLR306W	SYN8	P31377	255 aa		4.18	□□□□□ -1.74
UBC12	YLR306W	YER010C	P40011	234 aa		4.18	□□□□□ -1.74
UBC12	YLR306W	RIX7	Q07844	837 aa	Known RBP	4.18	□□□□□ -1.74
UBC12	YLR306W	ENT4	Q07872	247 aa		4.18	□□□□□ -1.74
UBC12	YLR306W	SGS1	P35187	1447 aa		4.18	□□□□□ -1.74
UBC12	YLR306W	DNA2	P38859	1522 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	PUP3	P25451	205 aa	Known RBP	4.17	□□□□□ -1.74
UBC12	YLR306W	PUT3	P25502	979 aa	Predicted RBP	4.17	□□□□□ -1.74
UBC12	YLR306W	YKL023W	P36103	277 aa	Known RBP	4.17	□□□□□ -1.74
UBC12	YLR306W	SHO1	P40073	367 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	ALG8	P40351	577 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	DUG3	P53871	357 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	EFM6	P53970	246 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	SHR3	Q02774	210 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	MSC1	Q03104	513 aa		4.17	□□□□□ -1.74
UBC12	YLR306W	RNA14	P25298	677 aa	Known RBP	4.16	□□□□□ -1.74
UBC12	YLR306W	YBL055C	P34220	418 aa	Predicted RBP	4.16	□□□□□ -1.74
UBC12	YLR306W	NUP133	P36161	1157 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
UBC12	YLR306W	SNG1	P46950	547 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	YJR154W	P47181	346 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	GTR1	Q00582	310 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	DPB4	Q04603	196 aa	Known RBP	4.16	□□□□□ -1.74
UBC12	YLR306W	SNO4	Q04902	237 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	MRPL51	Q06090	140 aa	Predicted RBP	4.16	□□□□□ -1.74
UBC12	YLR306W	HSP33	Q08914	237 aa	Known RBP	4.16	□□□□□ -1.74
UBC12	YLR306W	HSP32	Q08992	237 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	YER078W-A	Q3E7A2	54 aa		4.16	□□□□□ -1.74
UBC12	YLR306W	YCR007C	P25354	239 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	SGF29	P25554	259 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	YEL045C	P32616	141 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	FAR3	P46671	204 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	APT1	P49435	187 aa	Known RBP	4.15	□□□□□ -1.75
UBC12	YLR306W	YGR127W	P53275	312 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	BTN2	P53286	410 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	BUD32	P53323	261 aa		4.15	□□□□□ -1.75
UBC12	YLR306W	NCE102	Q12207	173 aa	RIP-Chip data	4.15	□□□□□ -1.75	not detected
UBC12	YLR306W	RRP12	Q12754	1228 aa	Known RBP	4.15	□□□□□ -1.75
UBC12	YLR306W	BOS1	P25385	244 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	HXT1	P32465	570 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	SLC1	P33333	303 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	AXL2	P38928	823 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	HAT2	P39984	401 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	SIP4	P46954	829 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	WSC2	P53832	503 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	SLD5	Q03406	294 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	YOR365C	Q08844	703 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	CTF3	Q12748	733 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	HSL1	P34244	1518 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	KOG1	P38873	1557 aa		4.14	□□□□□ -1.75
UBC12	YLR306W	LPD1	P09624	499 aa	Known RBP	4.13	□□□□□ -1.75
UBC12	YLR306W	SPT15	P13393	240 aa	Known RBP	4.13	□□□□□ -1.75
UBC12	YLR306W	FRE1	P32791	686 aa		4.13	□□□□□ -1.75
UBC12	YLR306W	PTR3	P43606	678 aa		4.13	□□□□□ -1.75
UBC12	YLR306W	VPS74	Q06385	345 aa		4.13	□□□□□ -1.75
UBC12	YLR306W	YPL272C	Q08984	517 aa		4.13	□□□□□ -1.75
UBC12	YLR306W	KGD1	P20967	1014 aa	Known RBP	4.12	□□□□□ -1.75
UBC12	YLR306W	RFS1	P38234	210 aa	Known RBP	4.12	□□□□□ -1.75
UBC12	YLR306W	YHR210C	P38893	341 aa		4.12	□□□□□ -1.75
UBC12	YLR306W	LYS4	P49367	693 aa	Predicted RBP	4.12	□□□□□ -1.75
UBC12	YLR306W	DSD1	P53095	428 aa		4.12	□□□□□ -1.75
UBC12	YLR306W	YGR021W	P53212	290 aa		4.12	□□□□□ -1.75
UBC12	YLR306W	DRN1	P53255	507 aa	Known RBP	4.12	□□□□□ -1.75
UBC12	YLR306W	TCO89	Q08921	799 aa		4.12	□□□□□ -1.75
UBC12	YLR306W	SUI2	P20459	304 aa	Known RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	FUN19	P28003	413 aa	Predicted RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	RPL32	P38061	130 aa	Known RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	KAP123	P40069	1113 aa	Known RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	ARC1	P46672	376 aa	Known RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	YGR126W	P53274	230 aa		4.11	□□□□□ -1.75
UBC12	YLR306W	YOR387C	Q08910	206 aa		4.11	□□□□□ -1.75
UBC12	YLR306W	LSP1	Q12230	341 aa	Known RBP	4.11	□□□□□ -1.75
UBC12	YLR306W	SUC2	P00724	532 aa		4.1	□□□□□ -1.75
UBC12	YLR306W	IMG1	P25626	169 aa		4.1	□□□□□ -1.75
UBC12	YLR306W	ICS2	P38284	255 aa		4.1	□□□□□ -1.75
UBC12	YLR306W	PTH1	P38876	190 aa	Known RBP	4.1	□□□□□ -1.75
UBC12	YLR306W	IES5	P40060	125 aa		4.1	□□□□□ -1.75
UBC12	YLR306W	IRC15	Q02733	499 aa		4.1	□□□□□ -1.75
UBC12	YLR306W	PAL1	Q05518	499 aa	Known RBP	4.1	□□□□□ -1.75
UBC12	YLR306W	SPT6	P23615	1451 aa	Known RBP	4.1	□□□□□ -1.75
UBC12	YLR306W	MTC6	P38849	526 aa		4.09	□□□□□ -1.75
UBC12	YLR306W	CIN4	P39110	191 aa		4.09	□□□□□ -1.75
UBC12	YLR306W	SDT1	P53078	280 aa		4.09	□□□□□ -1.75
UBC12	YLR306W	IVY1	Q04934	453 aa		4.09	□□□□□ -1.75
UBC12	YLR306W	ERV2	Q12284	196 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms