RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	SPE2	P21182	396 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	SGF29	P25554	259 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	PTP2	P29461	750 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	SEC24	P40482	926 aa	Known RBP	0.87	□□□□□ -2.27
PRP42	YDR235W	SGM1	P47166	707 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	RSM23	Q01163	450 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	HAL1	Q01766	294 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	YMR027W	Q04371	470 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	MRPL51	Q06090	140 aa	Predicted RBP	0.87	□□□□□ -2.27
PRP42	YDR235W	MLC2	Q06580	163 aa		0.87	□□□□□ -2.27
PRP42	YDR235W	TPK1	P06244	397 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	YEF3	P16521	1044 aa	Known RBP	0.86	□□□□□ -2.27
PRP42	YDR235W	HEM15	P16622	393 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	PAH1	P32567	862 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	MID2	P36027	376 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	MRPL36	P36531	177 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	DIA4	P38705	446 aa	Predicted RBP	0.86	□□□□□ -2.27
PRP42	YDR235W	PSF2	P40359	213 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	REG1	Q00816	1014 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ECM30	Q06673	1274 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	RTT109	Q07794	436 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	SDH5	Q08230	162 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ESA1	Q08649	445 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ERG27	Q12452	347 aa	Known RBP	0.86	□□□□□ -2.27
PRP42	YDR235W	ATP4	P05626	244 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	HIP1	P06775	603 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	CHS1	P08004	1131 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	NUC1	P08466	329 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	PHO81	P17442	1178 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	CPR4	P25334	318 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	MTR2	P34232	184 aa	Known RBP	0.86	□□□□□ -2.27
PRP42	YDR235W	HCS1	P34243	683 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	YHL041W	P38730	149 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	NPR3	P38742	1146 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ELO1	P39540	310 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	TMA108	P40462	946 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ALT2	P52892	507 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ERG26	P53199	349 aa	Known RBP	0.86	□□□□□ -2.27
PRP42	YDR235W	BUD32	P53323	261 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	SLD5	Q03406	294 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	VPS74	Q06385	345 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	PSK2	Q08217	1101 aa		0.86	□□□□□ -2.27
PRP42	YDR235W	ERG8	P24521	451 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	YCR007C	P25354	239 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	RAD16	P31244	790 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	YKL097C	P34245	136 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	PSD1	P39006	500 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	IST3	P40565	148 aa	Predicted RBP	0.85	□□□□□ -2.27
PRP42	YDR235W	IME4	P41833	600 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	YFL067W	P43537	175 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	GWT1	P47026	490 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	RPS7B	P48164	190 aa	Known RBP	0.85	□□□□□ -2.27
PRP42	YDR235W	PAP2	P53632	584 aa	Known RBP	0.85	□□□□□ -2.27
PRP42	YDR235W	DUG3	P53871	357 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	IRC15	Q02733	499 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	SHR3	Q02774	210 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	TSR1	Q07381	788 aa	Known RBP	0.85	□□□□□ -2.27
PRP42	YDR235W	TEN1	Q07921	160 aa		0.85	□□□□□ -2.27
PRP42	YDR235W	WTM1	Q12363	437 aa	Known RBP	0.85	□□□□□ -2.27
PRP42	YDR235W	YBR085C-A	O43137	85 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	PEP5	P12868	1029 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	APA1	P16550	321 aa	Known RBP	0.84	□□□□□ -2.28
PRP42	YDR235W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.28	not detected
PRP42	YDR235W	PET123	P17558	318 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	MSM1	P22438	575 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	YCL049C	P25577	312 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	PIM1	P36775	1133 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	ACA1	P39970	489 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	TOF1	P53840	1238 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	MRPL13	Q02204	264 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	INA17	Q02888	182 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	BLS1	Q06071	122 aa		0.84	□□□□□ -2.28
PRP42	YDR235W	THP3	Q12049	470 aa	Known RBP	0.84	□□□□□ -2.28
PRP42	YDR235W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	0.83	□□□□□ -2.28	RIP-Chip
PRP42	YDR235W	BUD5	P25300	642 aa	Predicted RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	YKL100C	P34248	587 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	YKL023W	P36103	277 aa	Known RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	BMT2	P38278	337 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	IFA38	P38286	347 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	UME6	P39001	836 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	BUR6	P40096	142 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	DIA3	P52290	468 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	DRN1	P53255	507 aa	Known RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	ARC35	P53731	342 aa	Known RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	CAF40	P53829	373 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	PIR3	Q03180	325 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	IVY1	Q04934	453 aa		0.83	□□□□□ -2.28
PRP42	YDR235W	LEU9	Q12166	604 aa	Known RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	LSP1	Q12230	341 aa	Known RBP	0.83	□□□□□ -2.28
PRP42	YDR235W	YLR302C	O13544	120 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	UBC1	P21734	215 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	DBF20	P32328	564 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	CNS1	P33313	385 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	SDH3	P33421	198 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	TEF4	P36008	412 aa	Known RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	KTR3	P38130	404 aa	Predicted RBP	0.82	□□□□□ -2.28
PRP42	YDR235W	ELP2	P42935	788 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	YJR154W	P47181	346 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	VPS4	P52917	437 aa		0.82	□□□□□ -2.28
PRP42	YDR235W	UBX4	P54730	416 aa		0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms