RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeast

Gene SHU2, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHU2	YDR078C	CIK1	Q01649	594 aa		4.08	□□□□□ -1.76
SHU2	YDR078C	RSC9	Q03124	581 aa		4.08	□□□□□ -1.76
SHU2	YDR078C	AIM32	Q04689	311 aa		4.08	□□□□□ -1.76
SHU2	YDR078C	RRI1	Q12468	440 aa		4.08	□□□□□ -1.76
SHU2	YDR078C	GAL4	P04386	881 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	YMR085W	P0CF18	432 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	SNF3	P10870	884 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	RPL3	P14126	387 aa	Known RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	SUI2	P20459	304 aa	Known RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	SNT1	P25357	1226 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	URA7	P28274	579 aa	Known RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	ULP2	P40537	1034 aa	Predicted RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	HXT9	P40885	567 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	AIM22	P47051	409 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	MNP1	P53163	194 aa	Predicted RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	CAF130	P53280	1122 aa	Predicted RBP	4.07	□□□□□ -1.76
SHU2	YDR078C	YNL144C	P53907	740 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	VPS9	P54787	451 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	TOF2	Q02208	771 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	VTC3	Q02725	835 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	CAC2	Q04199	468 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	TAP42	Q04372	366 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	ARP10	Q04549	284 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	ROY1	Q04847	553 aa		4.07	□□□□□ -1.76
SHU2	YDR078C	CBP1	P07252	654 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	PEP4	P07267	405 aa	Known RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	RPL31B	P0C2H9	113 aa	Known RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	PRP2	P20095	876 aa	Predicted RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	STV1	P37296	890 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	YIL060W	P40519	144 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	VMA13	P41807	478 aa	Known RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	ALK1	P43633	760 aa	Known RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	OGG1	P53397	376 aa	Predicted RBP	4.06	□□□□□ -1.76
SHU2	YDR078C	ERO1	Q03103	563 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	YMR160W	Q03823	816 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	SOV1	Q04748	898 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	MCP2	Q06567	569 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	NCE102	Q12207	173 aa	RIP-Chip data	4.06	□□□□□ -1.76	not detected
SHU2	YDR078C	AFI1	Q99222	893 aa		4.06	□□□□□ -1.76
SHU2	YDR078C	PGK1	P00560	416 aa	Known RBP	4.05	□□□□□ -1.76
SHU2	YDR078C	RML2	P32611	393 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	ECM32	P32644	1121 aa	Known RBP	4.05	□□□□□ -1.76
SHU2	YDR078C	HCS1	P34243	683 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	TUL1	P36096	758 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	APE4	P38821	490 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	TOM71	P38825	639 aa	Known RBP	4.05	□□□□□ -1.76
SHU2	YDR078C	PHO90	P39535	881 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	JEM1	P40358	645 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	ZIM17	P42844	174 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	ATG27	P46989	271 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	PKP2	P53170	491 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	ART5	P53244	586 aa	Known RBP	4.05	□□□□□ -1.76
SHU2	YDR078C	COP1	P53622	1201 aa	Known RBP	4.05	□□□□□ -1.76
SHU2	YDR078C	KAP120	Q02932	1032 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	FMP45	Q07651	309 aa		4.05	□□□□□ -1.76
SHU2	YDR078C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
SHU2	YDR078C	COR1	P07256	457 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
SHU2	YDR078C	MDM10	P18409	493 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	RPB8	P20436	146 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	OPI1	P21957	404 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	CPR2	P23285	205 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	IDH2	P28241	369 aa	Known RBP	4.04	□□□□□ -1.76
SHU2	YDR078C	YME2	P32843	850 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	SHP1	P34223	423 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	YKL023W	P36103	277 aa	Known RBP	4.04	□□□□□ -1.76
SHU2	YDR078C	APE3	P37302	537 aa	Known RBP	4.04	□□□□□ -1.76
SHU2	YDR078C	ROT2	P38138	954 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	LEU5	P38702	357 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	YHR210C	P38893	341 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	CFD1	P40558	293 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	SNG1	P46950	547 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	NET1	P47035	1189 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	TCB2	P48231	1178 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	DRN1	P53255	507 aa	Known RBP	4.04	□□□□□ -1.76
SHU2	YDR078C	POS5	Q06892	414 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	YDL057W	Q07379	328 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	YDL218W	Q07629	317 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	YOR365C	Q08844	703 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	CRC1	Q12289	327 aa		4.04	□□□□□ -1.76
SHU2	YDR078C	EDE1	P34216	1381 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	SPS4	P09937	338 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	PPH22	P23595	377 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	ERV1	P27882	189 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	RAD14	P28519	371 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	TFB1	P32776	642 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	LAG1	P38703	411 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	YIL024C	P40543	189 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	CAK1	P43568	368 aa	Predicted RBP	4.03	□□□□□ -1.76
SHU2	YDR078C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
SHU2	YDR078C	VPS25	P47142	202 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	YGL108C	P53139	140 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	SOL4	P53315	255 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	DUG3	P53871	357 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	HEF3	P53978	1044 aa	Known RBP	4.03	□□□□□ -1.76
SHU2	YDR078C	ERG13	P54839	491 aa	Known RBP	4.03	□□□□□ -1.76
SHU2	YDR078C	SLG1	P54867	378 aa		4.03	□□□□□ -1.76
SHU2	YDR078C	YVH1	Q02256	364 aa	Known RBP	4.03	□□□□□ -1.76
SHU2	YDR078C	CTL1	Q03220	320 aa	Known RBP	4.03	□□□□□ -1.76
SHU2	YDR078C	DON1	Q05610	365 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms