RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SGMS1Q86VZ5 419 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 RAB11FIP4Q86YS3 637 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 MAML3Q96JK9 1138 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.46□□□□□ -0.57
CLN3-261ENST00000637686 HMX1Q9NP08 348 aaPredicted RBP11.46□□□□□ -0.57
CLN3-261ENST00000637686 PNMA2Q9UL42 364 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 DIS3Q9Y2L1 958 aaKnown RBP11.46□□□□□ -0.57
CLN3-261ENST00000637686 SLC12A7Q9Y666 1083 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 SMCHD1A6NHR9 2005 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 BRCA2P51587 3418 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 GJB1P08034 283 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 CASTP20810 708 aaKnown RBP11.45□□□□□ -0.58
CLN3-261ENST00000637686 RPS6KB1P23443 525 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 CCND3P30281 292 aaPredicted RBP11.45□□□□□ -0.58
CLN3-261ENST00000637686 RGS19P49795 217 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 SLC35G1Q2M3R5 365 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 QRICH1Q2TAL8 776 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 CCDC144CPQ8IYA2 1237 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 CTCFLQ8NI51 663 aaPredicted RBP11.45□□□□□ -0.58
CLN3-261ENST00000637686 CLEC4DQ8WXI8 215 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 DEFB118Q96PH6 123 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 MAP3K14Q99558 947 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 AGXT2Q9BYV1 514 aa11.45□□□□□ -0.58
CLN3-261ENST00000637686 A1CFQ9NQ94 594 aaKnown RBP11.45□□□□□ -0.58
CLN3-261ENST00000637686 PAK6Q9NQU5 681 aaPredicted RBP11.45□□□□□ -0.58
CLN3-261ENST00000637686 PFASO15067 1338 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 NFIBO00712 420 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CYTH3O43739 400 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 SGPL1O95470 568 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CALM1P0DP23 149 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CALM2P0DP24 149 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CALM3P0DP25 149 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 KIF5BP33176 963 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 GJA8P48165 433 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 NEK4P51957 841 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 FGD1P98174 961 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CNTN2Q02246 1040 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 PRAMEF19Q5SWL8 479 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 NSMFQ6X4W1 530 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 SYNE3Q6ZMZ3 975 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 Q6ZUG5 572 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 FBXO11Q86XK2 927 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 HOMER1Q86YM7 354 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 FANCBQ8NB91 859 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 TRPV1Q8NER1 839 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 U2AF1L4Q8WU68 220 aaKnown RBP11.44□□□□□ -0.58
CLN3-261ENST00000637686 MTMR8Q96EF0 704 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 FGD4Q96M96 766 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 PIGSQ96S52 555 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 TINF2Q9BSI4 451 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 RIOX1Q9H6W3 641 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 CYP39A1Q9NYL5 469 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 BRPF3Q9ULD4 1205 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 PLXNA1Q9UIW2 1896 aa11.44□□□□□ -0.58
CLN3-261ENST00000637686 KIAA0100Q14667 2235 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 PTPDC1A2A3K4 754 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 SOWAHBA6NEL2 793 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 ZBTB5O15062 677 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 PPP1R11O60927 126 aaPredicted RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 PLEKHA8P1O95397 391 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 TFRCP02786 760 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 CNGA1P29973 690 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 GNAQP50148 359 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 EVCP57679 992 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 BAATQ14032 418 aaPredicted RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 APOA5Q6Q788 366 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 MICU3Q86XE3 530 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 HSCBQ8IWL3 235 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 CMTR1Q8N1G2 835 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 SRBD1Q8N5C6 995 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 FAM133AQ8N9E0 248 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 PIBF1Q8WXW3 757 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 SHISA4Q96DD7 197 aa11.43□□□□□ -0.58
CLN3-261ENST00000637686 PURBQ96QR8 312 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 RBBP6Q7Z6E9 1792 aaKnown RBP11.43□□□□□ -0.58
CLN3-261ENST00000637686 ABCB11O95342 1321 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 KLF18A0A0U1RQI7 1052 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 ZBTB43O43298 467 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 SNAI1O95863 264 aaPredicted RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 CYBAP13498 195 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 CALML3P27482 149 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 APOBRQ0VD83 1088 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 MAMDC4Q6UXC1 1216 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 SLC30A10Q6XR72 485 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 RNF207Q6ZRF8 634 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 ZNF467Q7Z7K2 595 aaPredicted RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 MSL3Q8N5Y2 521 aaKnown RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 TBC1D5Q92609 795 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 BRF1Q92994 677 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 LZTS2Q9BRK4 669 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 SPZ1Q9BXG8 430 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 AMNQ9BXJ7 453 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 CRISPLD2Q9H0B8 497 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 PDRG1Q9NUG6 133 aa11.42□□□□□ -0.58
CLN3-261ENST00000637686 NAP1L2Q9ULW6 460 aaPredicted RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 MRPL11Q9Y3B7 192 aaKnown RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 BAZ2BQ9UIF8 2168 aaKnown RBP11.42□□□□□ -0.58
CLN3-261ENST00000637686 SYNGAP1Q96PV0 1343 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 MYH6P13533 1939 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms