RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 STRBPQ96SI9 672 aaKnown RBP7.48□□□□□ -1.21
CUX1-220ENST00000607092 PBX4Q9BYU1 374 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 HIPK3Q9H422 1215 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 ZBTB40Q9NUA8 1239 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 POLR3EQ9NVU0 708 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 MTMR4Q9NYA4 1195 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 CLIP2Q9UDT6 1046 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 ISY1Q9ULR0 285 aaKnown RBP7.48□□□□□ -1.21
CUX1-220ENST00000607092 SLC4A7Q9Y6M7 1214 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 RAD50Q92878 1312 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 PLXNA1Q9UIW2 1896 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 ZNFX1Q9P2E3 1918 aaKnown RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 CYP2D7A0A087X1C5 515 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 PITPNM1O00562 1244 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 ERC2O15083 957 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 KPNA6O60684 536 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 CD4P01730 458 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 APPP05067 770 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 SLC1A4P43007 532 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 SLC4A3P48751 1232 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 CPT1AP50416 773 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 FSCN1Q16658 493 aaKnown RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 RCSD1Q6JBY9 416 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 TLK2Q86UE8 772 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 CCDC144CPQ8IYA2 1237 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 FAM133AQ8N9E0 248 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 SLC43A3Q8NBI5 491 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 PANK1Q8TE04 598 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 ADAMTS19Q8TE59 1207 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 UHRF1Q96T88 793 aaPredicted RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 PPP1R12CQ9BZL4 782 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 MAF1Q9H063 256 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 PUS7LQ9H0K6 701 aaKnown RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 PRDM12Q9H4Q4 367 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 RAVER2Q9HCJ3 691 aaKnown RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 VTA1Q9NP79 307 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 GPHNQ9NQX3 736 aaPredicted RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 CXXC1Q9P0U4 656 aaPredicted RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 COG5Q9UP83 839 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 ARIH1Q9Y4X5 557 aaPredicted RBP7.47□□□□□ -1.21
CUX1-220ENST00000607092 PCDHA11Q9Y5I1 949 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 MUC3AQ02505 3323 aa7.47□□□□□ -1.21
CUX1-220ENST00000607092 PLIN4Q96Q06 1357 aa7.46□□□□□ -1.21
CUX1-220ENST00000607092 PARP14Q460N5 1801 aa7.46□□□□□ -1.21
CUX1-220ENST00000607092 IGKV6D-41A0A0C4DH26 115 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 GSG1L2A8MUP6 293 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 KIF28PB7ZC32 967 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 PATL2C9JE40 543 aaKnown RBP7.46□□□□□ -1.22
CUX1-220ENST00000607092 TMEM232C9JQI7 657 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 NKRFO15226 690 aaKnown RBP eCLIP7.46□□□□□ -1.224e-7■■■□□ 16.6
CUX1-220ENST00000607092 RNF113AO15541 343 aaKnown RBP7.46□□□□□ -1.22
CUX1-220ENST00000607092 COL9A1P20849 921 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 IGFBP4P22692 258 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 EVX2Q03828 476 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 ITGA7Q13683 1181 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 PPP2R2DQ66LE6 453 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 DIEXFQ68CQ4 756 aaKnown RBP7.46□□□□□ -1.22
CUX1-220ENST00000607092 SLFN13Q68D06 897 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 C16orf59Q7L2K0 433 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 CCDC155Q8N6L0 562 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 NEDD1Q8NHV4 660 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 PHOSPHO2Q8TCD6 241 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 STAG1Q8WVM7 1258 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 LENG1Q96BZ8 264 aaPredicted RBP7.46□□□□□ -1.22
CUX1-220ENST00000607092 CEP95Q96GE4 821 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 NUP88Q99567 741 aaPredicted RBP7.46□□□□□ -1.22
CUX1-220ENST00000607092 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.46□□□□□ -1.22
CUX1-220ENST00000607092 RNF146Q9NTX7 359 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 RIPK3Q9Y572 518 aa7.46□□□□□ -1.22
CUX1-220ENST00000607092 ZBBXA8MT70 800 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 GPAA1O43292 621 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 PARNO95453 639 aaKnown RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 ATP2A2P16615 1042 aaKnown RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 POU3F3P20264 500 aaPredicted RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 CYP2C18P33260 490 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 NT5C2P49902 561 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 PTPN11Q06124 597 aaPredicted RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 TMEM67Q5HYA8 995 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 CXCL17Q6UXB2 119 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 TICAM2Q86XR7 235 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 IFNL3Q8IZI9 196 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 USP38Q8NB14 1042 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 RETREG2Q8NC44 543 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 PPM1EQ8WY54 764 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 FAM122AQ96E09 287 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 TRERF1Q96PN7 1200 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 SLC9A7Q96T83 725 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 NOC4LQ9BVI4 516 aaKnown RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 NAPBQ9H115 298 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 BCL11AQ9H165 835 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 A1CFQ9NQ94 594 aaKnown RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 HOMER2Q9NSB8 354 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 GNEQ9Y223 722 aaKnown RBP7.45□□□□□ -1.22
CUX1-220ENST00000607092 TTC41PQ6P2S7 1318 aa7.45□□□□□ -1.22
CUX1-220ENST00000607092 MUC6Q6W4X9 2439 aa7.44□□□□□ -1.22
CUX1-220ENST00000607092 BAZ2AQ9UIF9 1905 aaKnown RBP7.44□□□□□ -1.22
CUX1-220ENST00000607092 COL11A1P12107 1806 aaPredicted RBP7.44□□□□□ -1.22
CUX1-220ENST00000607092 MYADML2A6NDP7 307 aa7.44□□□□□ -1.22
CUX1-220ENST00000607092 TSPY2A6NKD2 308 aa7.44□□□□□ -1.22
CUX1-220ENST00000607092 DYNC1LI2O43237 492 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms