RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 UNC93B1Q9H1C4 597 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 ACAD9Q9H845 621 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 BIN2Q9UBW5 565 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CYP46A1Q9Y6A2 500 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 DDX49Q9Y6V7 483 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 ASTN1O14525 1302 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 hCG_1642624A0A1W2PR95 340 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 POTEFA5A3E0 1075 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 SOWAHBA6NEL2 793 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 OPLAHO14841 1288 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 ZBTB43O43298 467 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 ADD1P35611 737 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 EVCP57679 992 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 MAP3K21Q5TCX8 1036 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 TMTC3Q6ZXV5 915 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 HOMER1Q86YM7 354 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 ANKRD35Q8N283 1001 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 TRPV1Q8NER1 839 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 DDX11Q96FC9 970 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 SPZ1Q9BXG8 430 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 PDRG1Q9NUG6 133 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 CYP39A1Q9NYL5 469 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 FBXO40Q9UH90 709 aa16.52■□□□□ 0.24
SHKBP1-217ENST00000598558 ZBTB5O15062 677 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 HMGCRP04035 888 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 CALM1P0DP23 149 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 CALM2P0DP24 149 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 CALM3P0DP25 149 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 CCL5P13501 91 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 PDIA3P30101 505 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 SOX10P56693 466 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 FGD1P98174 961 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 BAATQ14032 418 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 PRAMEF19Q5SWL8 479 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 NSMFQ6X4W1 530 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 FBXO11Q86XK2 927 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 FAM133AQ8N9E0 248 aa16.51■□□□□ 0.23
SHKBP1-217ENST00000598558 GOLGA8AA7E2F4 631 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 GOLGA8BA8MQT2 603 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 SMARCA1P28370 1054 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 CCND3P30281 292 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 KIF5BP33176 963 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 OLFML2BQ68BL8 750 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 SLC30A10Q6XR72 485 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 SYNE3Q6ZMZ3 975 aa16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 NAP1L2Q9ULW6 460 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-217ENST00000598558 PNMA6FA0A0J9YX94 578 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 POTEB2H3BUK9 544 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 PRKAR2AP13861 404 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 GNAQP50148 359 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 RTN1Q16799 776 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 LZTS2Q9BRK4 669 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 AMNQ9BXJ7 453 aa16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 ALDH8A1Q9H2A2 487 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 NCOA5Q9HCD5 579 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 DIS3Q9Y2L1 958 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-217ENST00000598558 SMCHD1A6NHR9 2005 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 CNTNAP5Q8WYK1 1306 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 DTNBO60941 627 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 PPFIA3O75145 1194 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 SNAI1O95863 264 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 EN2P19622 333 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 METAP2P50579 478 aaKnown RBP eCLIP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 AK2P54819 239 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 RPS6P62753 249 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 UBXN2AP68543 259 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 CCT2P78371 535 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 NTRK3Q16288 839 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 TRMT44Q8IYL2 757 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 TINF2Q9BSI4 451 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 C22orf23Q9BZE7 217 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 RNF208Q9H0X6 261 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 COL20A1Q9P218 1284 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 TPCN1Q9ULQ1 816 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 PCDHA1Q9Y5I3 950 aa16.48■□□□□ 0.23
SHKBP1-217ENST00000598558 ABCB11O95342 1321 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 ZNF236Q9UL36 1845 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 PTPDC1A2A3K4 754 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 EIF5BO60841 1220 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 RBM25P49756 843 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 RCAN1P53805 252 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 MFSD14CQ5VZR4 134 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 MAMDC4Q6UXC1 1216 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 RGS22Q8NE09 1264 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 BACH2Q9BYV9 841 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.47■□□□□ 0.239e-6■■■■■ 32.4
SHKBP1-217ENST00000598558 PAK6Q9NQU5 681 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 RBM28Q9NW13 759 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 SLC5A4Q9NY91 659 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 V9GY48 417 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 NID2Q14112 1375 aa16.47■□□□□ 0.23
SHKBP1-217ENST00000598558 RPTORQ8N122 1335 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 CYBAP13498 195 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 CALML3P27482 149 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 NEK4P51957 841 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 RNF207Q6ZRF8 634 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 SYTL5Q8TDW5 730 aaPredicted RBP16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 SHISA4Q96DD7 197 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 RRP36Q96EU6 259 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 ZNF274Q96GC6 653 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms