RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 KCNB2Q92953 911 aa12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 PAWRQ96IZ0 340 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 PURBQ96QR8 312 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 MTA3Q9BTC8 594 aa12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 JMJD4Q9H9V9 463 aa12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 DDX49Q9Y6V7 483 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 PFASO15067 1338 aa12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 SYNGAP1Q96PV0 1343 aa12.83□□□□□ -0.36
SHKBP1-206ENST00000595523 ERICH2A1L162 156 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 KLRF2D3W0D1 207 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 POTEB2H3BUK9 544 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 QRICH1Q2TAL8 776 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 USH1GQ495M9 461 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 ANO1Q5XXA6 986 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 NSMFQ6X4W1 530 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 SLC30A10Q6XR72 485 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 ARMCX2Q7L311 632 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 CCDC144CPQ8IYA2 1237 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 MSL3Q8N5Y2 521 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 MTMR8Q96EF0 704 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 MYL10Q9BUA6 226 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 LRRC2Q9BYS8 371 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 KATNBL1Q9H079 304 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 NRBP1Q9UHY1 535 aa12.82□□□□□ -0.36
SHKBP1-206ENST00000595523 TRIOBPQ9H2D6 2365 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 ADCY6O43306 1168 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 CYTH3O43739 400 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 MSCO60682 206 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 PPP1R11O60927 126 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 COL6A1P12109 1028 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 HSPA4P34932 840 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 EXOSC10Q01780 885 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 BAATQ14032 418 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 RNF20Q5VTR2 975 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 ZNF654Q8IZM8 581 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 LENG1Q96BZ8 264 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 TMEM87BQ96K49 555 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 TCEANC2Q96MN5 208 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 RIOX1Q9H6W3 641 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 VAT1LQ9HCJ6 419 aa12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-206ENST00000595523 OPLAHO14841 1288 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 LIFRP42702 1097 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 NECAB2Q7Z6G3 386 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 CATIPQ7Z7H3 387 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 TBC1D5Q92609 795 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 NEK1Q96PY6 1258 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 PNMA2Q9UL42 364 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 CNPY2Q9Y2B0 182 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 SNX14Q9Y5W7 946 aa12.8□□□□□ -0.36
SHKBP1-206ENST00000595523 PTPDC1A2A3K4 754 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 DHX16O60231 1041 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 DDAH1O94760 285 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 RXRAP19793 462 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 RPS6P62753 249 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 ACVR2BQ13705 512 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 PRPF38BQ5VTL8 546 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 SGMS1Q86VZ5 419 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 MORC4Q8TE76 937 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 NUP133Q8WUM0 1156 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 PIGSQ96S52 555 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 MAP3K14Q99558 947 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 C11orf49Q9H6J7 331 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 ZHX1Q9UKY1 873 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 MYH7BA7E2Y1 1941 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 ABCB11O95342 1321 aa12.79□□□□□ -0.36
SHKBP1-206ENST00000595523 ZBTB5O15062 677 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 REC8O95072 547 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 AKR1A1P14550 325 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 CPA1P15085 419 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 CALML3P27482 149 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 ALDH5A1P51649 535 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 GJC2Q5T442 439 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 RNF207Q6ZRF8 634 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 DHX32Q7L7V1 743 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 FBXO11Q86XK2 927 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 RAB11FIP4Q86YS3 637 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 TMTC2Q8N394 836 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 RGS22Q8NE09 1264 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 HTATIP2Q9BUP3 242 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 ABHD16BQ9H3Z7 469 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 COL20A1Q9P218 1284 aa12.78□□□□□ -0.36
SHKBP1-206ENST00000595523 LTBP2Q14767 1821 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 DOCK5Q9H7D0 1870 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 CCDC69A6NI79 296 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 ASB14A6NK59 587 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 DNM1LO00429 736 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 ADAMTS4O75173 837 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 PLEKHA8P1O95397 391 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 PGK1P00558 417 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 RARBP10826 455 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 IRX5P78411 483 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 KRT32Q14532 448 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 LRRC41Q15345 812 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 CCDC144BQ3MJ40 725 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 NFXL1Q6ZNB6 911 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 HOMER1Q86YM7 354 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 SPZ1Q9BXG8 430 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 AMNQ9BXJ7 453 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 XPNPEP3Q9NQH7 507 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms