RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RALYLQ86SE5 291 aaKnown RBP17.69■□□□□ 0.42
TRIM28-205ENST00000595028 LSG1Q9H089 658 aaKnown RBP17.69■□□□□ 0.42
TRIM28-205ENST00000595028 PFASO15067 1338 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 WDR19Q8NEZ3 1342 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 TTC28Q96AY4 2481 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 MUC3AQ02505 3323 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 DNAH12Q6ZR08 3092 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 E7EWF7 191 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 ASPRV1Q53RT3 343 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 MUM1L1Q5H9M0 696 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 FAM133AQ8N9E0 248 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 CNPY2Q9Y2B0 182 aa17.68■□□□□ 0.42
TRIM28-205ENST00000595028 POTEB2H3BUK9 544 aa17.67■□□□□ 0.42
TRIM28-205ENST00000595028 ZNF865P0CJ78 1059 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-205ENST00000595028 ANO1Q5XXA6 986 aa17.67■□□□□ 0.42
TRIM28-205ENST00000595028 NCOA7Q8NI08 942 aa17.67■□□□□ 0.42
TRIM28-205ENST00000595028 CPVLQ9H3G5 476 aa17.67■□□□□ 0.42
TRIM28-205ENST00000595028 PNMA2Q9UL42 364 aa17.67■□□□□ 0.42
TRIM28-205ENST00000595028 DNM1LO00429 736 aa17.66■□□□□ 0.42
TRIM28-205ENST00000595028 SNAI1O95863 264 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-205ENST00000595028 PARP1P09874 1014 aaKnown RBP17.66■□□□□ 0.42
TRIM28-205ENST00000595028 CNTN2Q02246 1040 aa17.66■□□□□ 0.42
TRIM28-205ENST00000595028 ARMCX2Q7L311 632 aa17.66■□□□□ 0.42
TRIM28-205ENST00000595028 MB21D2Q8IYB1 491 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-205ENST00000595028 ANO2Q9NQ90 1003 aa17.66■□□□□ 0.42
TRIM28-205ENST00000595028 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-205ENST00000595028 ZHX1Q9UKY1 873 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-205ENST00000595028 CDC45O75419 566 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 RARBP10826 455 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 AKR1A1P14550 325 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 FAM109BQ6ICB4 259 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-205ENST00000595028 NSMFQ6X4W1 530 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 FAM161BQ96MY7 647 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 UBA5Q9GZZ9 404 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 CYP39A1Q9NYL5 469 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 CDH23Q9H251 3354 aa17.65■□□□□ 0.42
TRIM28-205ENST00000595028 SOWAHBA6NEL2 793 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 NFIBO00712 420 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 IFIT3O14879 490 aaKnown RBP17.64■□□□□ 0.41
TRIM28-205ENST00000595028 SLC27A2O14975 620 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 ANTXR2P58335 489 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 SART3Q15020 963 aaKnown RBP17.64■□□□□ 0.41
TRIM28-205ENST00000595028 CDC37Q16543 378 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-205ENST00000595028 CASC1Q6TDU7 716 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 CCDC144CPQ8IYA2 1237 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 ARRDC4Q8NCT1 418 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 LENG1Q96BZ8 264 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-205ENST00000595028 ASTN1O14525 1302 aa17.64■□□□□ 0.41
TRIM28-205ENST00000595028 ERICH2A1L162 156 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 GJC2Q5T442 439 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-205ENST00000595028 ADGRF4Q8IZF3 695 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 CLEC4DQ8WXI8 215 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 KATNBL1Q9H079 304 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 ABHD16BQ9H3Z7 469 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 SENP2Q9HC62 589 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 XPNPEP3Q9NQH7 507 aa17.63■□□□□ 0.41
TRIM28-205ENST00000595028 KBTBD13C9JR72 458 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 ACVR2BQ13705 512 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 GRM4Q14833 912 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 WTAPQ15007 396 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 NECTIN1Q15223 517 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 LRRC41Q15345 812 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 TMEM67Q5HYA8 995 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 CREB3L3Q68CJ9 461 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 SLC30A10Q6XR72 485 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 CHST3Q7LGC8 479 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 FAM184BQ9ULE4 1060 aa17.62■□□□□ 0.41
TRIM28-205ENST00000595028 PTPDC1A2A3K4 754 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 ASB14A6NK59 587 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 DHX16O60231 1041 aaKnown RBP17.61■□□□□ 0.41
TRIM28-205ENST00000595028 MDM2Q00987 491 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-205ENST00000595028 BAATQ14032 418 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-205ENST00000595028 LRRC26Q2I0M4 334 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 USH1GQ495M9 461 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 STAG2Q8N3U4 1231 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 SENP6Q9GZR1 1112 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-205ENST00000595028 JMJD4Q9H9V9 463 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 MAD2L2Q9UI95 211 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 SYNRGQ9UMZ2 1314 aa17.61■□□□□ 0.41
TRIM28-205ENST00000595028 BAZ2BQ9UIF8 2168 aaKnown RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 PALM3A6NDB9 673 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 ADCY6O43306 1168 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 ADAMTS4O75173 837 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 PGK1P00558 417 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 MYCNP04198 464 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 TROAPQ12815 778 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 QRICH1Q2TAL8 776 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 RNF207Q6ZRF8 634 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 IGDCC4Q8TDY8 1250 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 PURBQ96QR8 312 aaKnown RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 MTA3Q9BTC8 594 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 LY9Q9HBG7 655 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 ADD3Q9UEY8 706 aaKnown RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 DDX49Q9Y6V7 483 aaKnown RBP17.6■□□□□ 0.41
TRIM28-205ENST00000595028 ABCB11O95342 1321 aa17.6■□□□□ 0.41
TRIM28-205ENST00000595028 LOC102724159A0A0B4J2E5 919 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 KLRF2D3W0D1 207 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 PRC1O43663 620 aa17.59■□□□□ 0.41
TRIM28-205ENST00000595028 DUSP11O75319 330 aaKnown RBP17.59■□□□□ 0.41
TRIM28-205ENST00000595028 CALML3P27482 149 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms