RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 TNRC18O15417 2968 aaPredicted RBP11.19□□□□□ -0.62
DDX39A-220ENST00000593008 FDPSP14324 419 aaKnown RBP11.19□□□□□ -0.62
DDX39A-220ENST00000593008 ERCC3P19447 782 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 RGS2P41220 211 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 CDC37Q16543 378 aaPredicted RBP11.19□□□□□ -0.62
DDX39A-220ENST00000593008 CCL14Q16627 93 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 TYW1BQ6NUM6 668 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 NCAPG2Q86XI2 1143 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 HSCBQ8IWL3 235 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 TMTC2Q8N394 836 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 MB21D1Q8N884 522 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 REPS2Q8NFH8 660 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 SLC26A6Q9BXS9 759 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 IVNS1ABPQ9Y6Y0 642 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 HMGCRP04035 888 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 CALM1P0DP23 149 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 CALM2P0DP24 149 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 CALM3P0DP25 149 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 PTPREP23469 700 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 STAT2P52630 851 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 RCAN1P53805 252 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 MAP2K5Q13163 448 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 PKN1Q16512 942 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 QRICH1Q2TAL8 776 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 BTNL9Q6UXG8 535 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 USP6NLQ92738 828 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 AGBL1Q96MI9 1066 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 DEFB118Q96PH6 123 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 APBA2Q99767 749 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 RAVER2Q9HCJ3 691 aaKnown RBP11.18□□□□□ -0.62
DDX39A-220ENST00000593008 FEM1BQ9UK73 627 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 ADAMTS5Q9UNA0 930 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 DOCK3Q8IZD9 2030 aa11.18□□□□□ -0.62
DDX39A-220ENST00000593008 SLC15A5A6NIM6 579 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 XRCC5P13010 732 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 PRKAR2AP13861 404 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 IFNAR1P17181 557 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 ADORA2AP29274 412 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 KIF5BP33176 963 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 CUL4AQ13619 759 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 GRB14Q14449 540 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 USH1GQ495M9 461 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 GPATCH4Q5T3I0 446 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 WWC2Q6AWC2 1192 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 CPXCR1Q8N123 301 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 PRPF38AQ8NAV1 312 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 SMARCC2Q8TAQ2 1214 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 MAP3K14Q99558 947 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 SPZ1Q9BXG8 430 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 RANBP17Q9H2T7 1088 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 RIOX1Q9H6W3 641 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 SH2B1Q9NRF2 756 aaPredicted RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 RBM28Q9NW13 759 aaKnown RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 FLRT1Q9NZU1 646 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 PCDH10Q9P2E7 1040 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 ZNF214Q9UL59 606 aaPredicted RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 RIPK3Q9Y572 518 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 CTDP1Q9Y5B0 961 aaPredicted RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 V9GY48 417 aaPredicted RBP11.17□□□□□ -0.62
DDX39A-220ENST00000593008 SMCHD1A6NHR9 2005 aa11.17□□□□□ -0.62
DDX39A-220ENST00000593008 CPLX1O14810 134 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 TFRCP02786 760 aaKnown RBP11.16□□□□□ -0.62
DDX39A-220ENST00000593008 GJB1P08034 283 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 STAT3P40763 770 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 GJA8P48165 433 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 SNRNP48Q6IEG0 339 aaKnown RBP11.16□□□□□ -0.62
DDX39A-220ENST00000593008 DPP9Q86TI2 863 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 SHCBP1Q8NEM2 672 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 NPLOC4Q8TAT6 608 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 U2AF1L4Q8WU68 220 aaKnown RBP11.16□□□□□ -0.62
DDX39A-220ENST00000593008 MTMR8Q96EF0 704 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 ZSCAN31Q96LW9 406 aaPredicted RBP11.16□□□□□ -0.62
DDX39A-220ENST00000593008 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.16□□□□□ -0.621e-7■■□□□ 11.6
DDX39A-220ENST00000593008 MROH8Q9H579 483 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 SLC38A10Q9HBR0 1119 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 HOMER2Q9NSB8 354 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 VPS54Q9P1Q0 977 aa11.16□□□□□ -0.62
DDX39A-220ENST00000593008 PLXNB2O15031 1838 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 OPLAHO14841 1288 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 STRNO43815 780 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 COBLO75128 1261 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 ZBED4O75132 1171 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 PGK2P07205 417 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 FCER1AP12319 257 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 GJB2P29033 226 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 CCND3P30281 292 aaPredicted RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 CYP2C19P33261 490 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 ANP32AP39687 249 aaKnown RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 MCM2P49736 904 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 GUCY1B3Q02153 619 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 CACNB2Q08289 660 aaPredicted RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 HEATR3Q7Z4Q2 680 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 FAM160B2Q86V87 743 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 RIOX2Q8IUF8 465 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 MMP19Q99542 508 aa11.15□□□□□ -0.62
DDX39A-220ENST00000593008 HMX1Q9NP08 348 aaPredicted RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 PAK6Q9NQU5 681 aaPredicted RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 ORC3Q9UBD5 711 aaPredicted RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 DDX49Q9Y6V7 483 aaKnown RBP11.15□□□□□ -0.62
DDX39A-220ENST00000593008 RPTORQ8N122 1335 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms