RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 P2RX5Q93086 422 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CCDC42Q96M95 316 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 PURBQ96QR8 312 aaKnown RBP13.63□□□□□ -0.23
SHMT1-208ENST00000582352 DUSP9Q99956 384 aaKnown RBP13.63□□□□□ -0.23
SHMT1-208ENST00000582352 NOC4LQ9BVI4 516 aaKnown RBP13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CCSER1Q9C0I3 900 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 TMEM60Q9H2L4 133 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CUEDC2Q9H467 287 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 PLEKHA4Q9H4M7 779 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 MAGEF1Q9HAY2 307 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 MYH1P12882 1939 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CASZ1Q86V15 1759 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 COL4A1P02462 1669 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 PDE2AO00408 941 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 LAD1O00515 517 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 MYBL2P10244 700 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 CCNE1P24864 410 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 CRKLP46109 303 aaKnown RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 INTS5Q6P9B9 1019 aaKnown RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 CCNI2Q6ZMN8 369 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 TRIM58Q8NG06 486 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 NSUN4Q96CB9 384 aaKnown RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 EFCC1Q9HA90 598 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 ATP8A2Q9NTI2 1148 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 SLAIN2Q9P270 581 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 FAM184BQ9ULE4 1060 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 DUSP10Q9Y6W6 482 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 GOLGA6CA6NDK9 693 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 USO1O60763 962 aaKnown RBP13.62□□□□□ -0.23
SHMT1-208ENST00000582352 GOLGA6DP0CG33 693 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 CYP2D6P10635 497 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 PDE4DQ08499 809 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 TCP11L1Q9NUJ3 509 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 GOLGA6AQ9NYA3 693 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 JRKLQ9Y4A0 524 aa13.62□□□□□ -0.23
SHMT1-208ENST00000582352 A0A1W2PQJ5 194 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 WTIPA6NIX2 430 aaPredicted RBP13.61□□□□□ -0.23
SHMT1-208ENST00000582352 TACC1O75410 805 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 ASIC1P78348 528 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 CDK17Q00537 523 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 MECOMQ03112 1051 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 TTC31Q49AM3 519 aaPredicted RBP13.61□□□□□ -0.23
SHMT1-208ENST00000582352 RCSD1Q6JBY9 416 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 HEATR3Q7Z4Q2 680 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PNMA1Q8ND90 353 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PPM1EQ8WY54 764 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 IFIH1Q9BYX4 1025 aaKnown RBP13.61□□□□□ -0.23
SHMT1-208ENST00000582352 LRWD1Q9UFC0 647 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 SNX12Q9UMY4 172 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 DOT1LQ8TEK3 1739 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PLCG1P19174 1290 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PRPHP41219 470 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PPP1R2P41236 205 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 CORO7P57737 925 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 DNAJC21Q5F1R6 531 aaKnown RBP13.61□□□□□ -0.23
SHMT1-208ENST00000582352 AMOTL1Q8IY63 956 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 IQCDQ96DY2 449 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PCDHA6Q9UN73 950 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 PCDHA8Q9Y5H6 950 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 KIAA1551Q9HCM1 1747 aa13.61□□□□□ -0.23
SHMT1-208ENST00000582352 EXOC5O00471 708 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ADAMTS2O95450 1211 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 SLC4A8Q2Y0W8 1093 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 FIGNQ5HY92 759 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ANKRD40Q6AI12 368 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 CABP7Q86V35 215 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 FAM84BQ96KN1 310 aaPredicted RBP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ERGIC2Q96RQ1 377 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 RASSF10A6NK89 507 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 M0R2N6 131 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 GNAQP50148 359 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 TYW1BQ6NUM6 668 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 AENQ8WTP8 325 aaKnown RBP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 RUBCNQ92622 972 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 AK8Q96MA6 479 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 DRC1Q96MC2 740 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ALS2CR12Q96Q35 445 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 TRIM9Q9C026 710 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 DEF6Q9H4E7 631 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 BSDC1Q9NW68 430 aaPredicted RBP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 SHOX2O60902 331 aaPredicted RBP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 SBK1Q52WX2 424 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 MIIPQ5JXC2 388 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 SND1Q7KZF4 910 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 KRT26Q7Z3Y9 468 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ZSCAN29Q8IWY8 852 aaPredicted RBP13.6□□□□□ -0.23
SHMT1-208ENST00000582352 STAG2Q8N3U4 1231 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 DAGLBQ8NCG7 672 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 SH2D4AQ9H788 454 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 MCM9Q9NXL9 1143 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 ZNF652Q9Y2D9 606 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 CAPN6Q9Y6Q1 641 aa13.6□□□□□ -0.23
SHMT1-208ENST00000582352 AGPSO00116 658 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 FLT1P17948 1338 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 TFAP4Q01664 338 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 STK4Q13043 487 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 CCDC181Q5TID7 509 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 MMGT1Q8N4V1 131 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms