RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 MRPL11Q9Y3B7 192 aaKnown RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 CYTH3O43739 400 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 RXRAP19793 462 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 METAP2P50579 478 aaKnown RBP eCLIP11.08□□□□□ -0.64
CCDC40-214ENST00000575431 NEK4P51957 841 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 SNAP25P60880 206 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 APOBRQ0VD83 1088 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 TOB2Q14106 344 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-214ENST00000575431 OLFML2BQ68BL8 750 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 CPLX2Q6PUV4 134 aaKnown RBP11.08□□□□□ -0.64
CCDC40-214ENST00000575431 TMTC3Q6ZXV5 915 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 TEX2Q8IWB9 1127 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 ABHD8Q96I13 439 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 PIGSQ96S52 555 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 BACH2Q9BYV9 841 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 CPVLQ9H3G5 476 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 NAP1L2Q9ULW6 460 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-214ENST00000575431 DOCK3Q8IZD9 2030 aa11.08□□□□□ -0.64
CCDC40-214ENST00000575431 MYH6P13533 1939 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 DNAJC25-GNG10A0A024R161 153 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 LOC102724159A0A0B4J2E5 919 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 POTEB2H3BUK9 544 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 hCG_1984214I3L0E3 225 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 HMGCRP04035 888 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 PDIA3P30101 505 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 PWP2Q15269 919 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 ZNF792Q3KQV3 632 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 MFSD14CQ5VZR4 134 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 RNF207Q6ZRF8 634 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 ZNF467Q7Z7K2 595 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 HOMER1Q86YM7 354 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 CCDC144CPQ8IYA2 1237 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 SRBD1Q8N5C6 995 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 ZNF713Q8N859 430 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 MPHOSPH6Q99547 160 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 A1CFQ9NQ94 594 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 HOMER2Q9NSB8 354 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 BIN2Q9UBW5 565 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 ADD3Q9UEY8 706 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 PCDHA1Q9Y5I3 950 aa11.07□□□□□ -0.64
CCDC40-214ENST00000575431 ZNFX1Q9P2E3 1918 aaKnown RBP11.07□□□□□ -0.64
CCDC40-214ENST00000575431 B4DLN1 442 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 COBLO75128 1261 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 PLEKHA8P1O95397 391 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 ELNP15502 786 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 MRPL12P52815 198 aaKnown RBP11.06□□□□□ -0.64
CCDC40-214ENST00000575431 AK2P54819 239 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 RABEP1Q15276 862 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 USH1GQ495M9 461 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 NSMFQ6X4W1 530 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 NPLOC4Q8TAT6 608 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 CLEC4DQ8WXI8 215 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 TRIB2Q92519 343 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 MAML3Q96JK9 1138 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 ZNF333Q96JL9 665 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 CYP39A1Q9NYL5 469 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 NRBP1Q9UHY1 535 aa11.06□□□□□ -0.64
CCDC40-214ENST00000575431 CPLX1O14810 134 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 CDKL5O76039 1030 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 INHAP05111 366 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 PGK2P07205 417 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 IFNAR1P17181 557 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 AKAP17AQ02040 695 aaKnown RBP11.05□□□□□ -0.64
CCDC40-214ENST00000575431 GHRHRQ02643 423 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 SLC35G1Q2M3R5 365 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 MUM1L1Q5H9M0 696 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 MAMDC4Q6UXC1 1216 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 RAB11FIP4Q86YS3 637 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 TRIM22Q8IYM9 498 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 FAM133AQ8N9E0 248 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 DNERQ8NFT8 737 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 SH3TC2Q8TF17 1288 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 TINF2Q9BSI4 451 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 TMEM106CQ9BVX2 250 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 RNF26Q9BY78 433 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-214ENST00000575431 SLKQ9H2G2 1235 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-214ENST00000575431 HMX1Q9NP08 348 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-214ENST00000575431 FAM217BQ9NTX9 383 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-214ENST00000575431 RPTORQ8N122 1335 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 SYNGAP1Q96PV0 1343 aa11.05□□□□□ -0.64
CCDC40-214ENST00000575431 PLXNA1Q9UIW2 1896 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 PTPDC1A2A3K4 754 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 ASB14A6NK59 587 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 NFIBO00712 420 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 PRPF3O43395 683 aaKnown RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 ST18O60284 1047 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 MSCO60682 206 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 PPP1R11O60927 126 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 IGHA2P01877 340 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 CDC27P30260 824 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 ADD1P35611 737 aaKnown RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 RPS6P62753 249 aaKnown RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 FUT2Q10981 343 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 BAATQ14032 418 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 MAP3K21Q5TCX8 1036 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 FAM177A1Q8N128 213 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 CMTR1Q8N1G2 835 aaKnown RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 CCDC82Q8N4S0 544 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 ZSCAN31Q96LW9 406 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 TBC1D32Q96NH3 1257 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms