RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 RARSP54136 660 aaKnown RBP14.18□□□□□ -0.14
CLK3-222ENST00000568232 CSPP1Q1MSJ5 1256 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 SLFNL1Q499Z3 407 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 TMED8Q6PL24 325 aaPredicted RBP14.18□□□□□ -0.14
CLK3-222ENST00000568232 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.18□□□□□ -0.14
CLK3-222ENST00000568232 GDPD5Q8WTR4 605 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 SLC9A7Q96T83 725 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 UBE2ZQ9H832 354 aaPredicted RBP14.18□□□□□ -0.14
CLK3-222ENST00000568232 PDGFCQ9NRA1 345 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.17□□□□□ -0.14
CLK3-222ENST00000568232 TCRBV5S4A2TA0A5A2 114 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 TRIM27P14373 513 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 ATP8B2P98198 1209 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 C12orf60Q5U649 245 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 TMCO2Q7Z6W1 182 aaPredicted RBP14.17□□□□□ -0.14
CLK3-222ENST00000568232 MIER1Q8N108 512 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 PRPF38AQ8NAV1 312 aaKnown RBP14.17□□□□□ -0.14
CLK3-222ENST00000568232 PHOSPHO2Q8TCD6 241 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 PPP1R13LQ8WUF5 828 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 CLUAP1Q96AJ1 413 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 PHOX2BQ99453 314 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.17□□□□□ -0.14
CLK3-222ENST00000568232 AP5M1Q9H0R1 490 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 HOMER2Q9NSB8 354 aa14.17□□□□□ -0.14
CLK3-222ENST00000568232 SOWAHBA6NEL2 793 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 KIF28PB7ZC32 967 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 USP17L12C9JPN9 530 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 USP17L21D6R901 530 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 RBAK-RBAKDNI3L0D1 243 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 ATP2A1O14983 1001 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 ZBED4O75132 1171 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 CT47B1P0C2W7 299 aaPredicted RBP14.16□□□□□ -0.14
CLK3-222ENST00000568232 ACTN1P12814 892 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 ALADP13716 330 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 KCNA5P22460 613 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 C16orf86Q6ZW13 317 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-222ENST00000568232 EEPD1Q7L9B9 569 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 KIFC2Q96AC6 838 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 SEZ6LQ9BYH1 1024 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 FTOQ9C0B1 505 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-222ENST00000568232 C1orf115Q9H7X2 142 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 MTUS1Q9ULD2 1270 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 CTDP1Q9Y5B0 961 aaPredicted RBP14.16□□□□□ -0.14
CLK3-222ENST00000568232 MCM3APO60318 1980 aa14.16□□□□□ -0.14
CLK3-222ENST00000568232 TNKSO95271 1327 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 F5H6K3 240 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 ZEB2O60315 1214 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 NDUFB10O96000 172 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 KLRC3Q07444 240 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 LEXMQ3ZCV2 418 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 FAM133AQ8N9E0 248 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 NOP58Q9Y2X3 529 aaKnown RBP14.15□□□□□ -0.14
CLK3-222ENST00000568232 TRIOO75962 3097 aa14.15□□□□□ -0.14
CLK3-222ENST00000568232 COL4A4P53420 1690 aaPredicted RBP14.14□□□□□ -0.15
CLK3-222ENST00000568232 MBD4O95243 580 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 SUPT20HL2P0C7V6 817 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 PTCRAQ6ISU1 281 aaPredicted RBP14.14□□□□□ -0.15
CLK3-222ENST00000568232 TAPT1Q6NXT6 567 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 AACSQ86V21 672 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 CHST13Q8NET6 341 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 SUGCTQ9HAC7 445 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 SLC38A10Q9HBR0 1119 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 ATP8A2Q9NTI2 1148 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 LMCD1Q9NZU5 365 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 FBXO40Q9UH90 709 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 SCN5AQ14524 2016 aa14.14□□□□□ -0.15
CLK3-222ENST00000568232 GOLIM4O00461 696 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 DCXO43602 365 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 CHGBP05060 677 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 IQCF3P0C7M6 154 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 TTF1Q15361 905 aaPredicted RBP14.13□□□□□ -0.15
CLK3-222ENST00000568232 FBXO16Q8IX29 292 aaPredicted RBP14.13□□□□□ -0.15
CLK3-222ENST00000568232 STK11IPQ8N1F8 1099 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 FRAT1Q92837 279 aaPredicted RBP14.13□□□□□ -0.15
CLK3-222ENST00000568232 DCBLD2Q96PD2 775 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 DNAJC2Q99543 621 aaKnown RBP14.13□□□□□ -0.15
CLK3-222ENST00000568232 ZNF536O15090 1300 aa14.13□□□□□ -0.15
CLK3-222ENST00000568232 CFAP54Q96N23 3096 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 MYH8P13535 1937 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 POTEB3A0JP26 581 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 GRXCR2A6NFK2 248 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 RFC2P35250 354 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 FAM47CQ5HY64 1035 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 IQSEC1Q6DN90 963 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 CTR9Q6PD62 1173 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 POTEBQ6S5H4 581 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 HFE2Q6ZVN8 426 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 RASEFQ8IZ41 740 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 TMEM57Q8N5G2 664 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLK3-222ENST00000568232 KCNH6Q9H252 994 aa14.12□□□□□ -0.15
CLK3-222ENST00000568232 A1CFQ9NQ94 594 aaKnown RBP14.12□□□□□ -0.15
CLK3-222ENST00000568232 ASB14A6NK59 587 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 MYL3P08590 195 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 DEFB103AP81534 67 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 PURAQ00577 322 aaKnown RBP14.11□□□□□ -0.15
CLK3-222ENST00000568232 KIAA1211Q6ZU35 1233 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 PURBQ96QR8 312 aaKnown RBP14.11□□□□□ -0.15
CLK3-222ENST00000568232 ZBED2Q9BTP6 218 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms