RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CLEC4DQ8WXI8 215 aa21.83■■□□□ 1.09
CLN3-227ENST00000567495 SPC25Q9HBM1 224 aa21.83■■□□□ 1.09
CLN3-227ENST00000567495 ANO2Q9NQ90 1003 aa21.83■■□□□ 1.09
CLN3-227ENST00000567495 NFIBO00712 420 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 DHX16O60231 1041 aaKnown RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 WTAPQ15007 396 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 CDC37Q16543 378 aaPredicted RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 LRRC26Q2I0M4 334 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 RNF20Q5VTR2 975 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 RNF207Q6ZRF8 634 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 STOX1Q6ZVD7 989 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 MB21D2Q8IYB1 491 aaPredicted RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 MPHOSPH6Q99547 160 aaKnown RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 TSEN34Q9BSV6 310 aaKnown RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 PHF24Q9UPV7 400 aa21.82■■□□□ 1.08
CLN3-227ENST00000567495 COLQQ9Y215 455 aaPredicted RBP21.82■■□□□ 1.08
CLN3-227ENST00000567495 PTPDC1A2A3K4 754 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 KLRF2D3W0D1 207 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 CDC45O75419 566 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 PGK1P00558 417 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 CCDC144BQ3MJ40 725 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 TMEM67Q5HYA8 995 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 CHRDL2Q6WN34 429 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 CATIPQ7Z7H3 387 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 TMTC2Q8N394 836 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 MORC4Q8TE76 937 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 KATNBL1Q9H079 304 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 TAF6LQ9Y6J9 622 aa21.81■■□□□ 1.08
CLN3-227ENST00000567495 ABCB11O95342 1321 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 PALM3A6NDB9 673 aaPredicted RBP21.8■■□□□ 1.08
CLN3-227ENST00000567495 B4DLN1 442 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 SLC27A2O14975 620 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 MCM5P33992 734 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 ADCYAP1R1P41586 468 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 MRPL12P52815 198 aaKnown RBP21.8■■□□□ 1.08
CLN3-227ENST00000567495 TRAF1Q13077 416 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 NECTIN1Q15223 517 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 SKAP1Q86WV1 359 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 CPVLQ9H3G5 476 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 JMJD4Q9H9V9 463 aa21.8■■□□□ 1.08
CLN3-227ENST00000567495 ADAMTS4O75173 837 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 ATN1P54259 1190 aaPredicted RBP21.79■■□□□ 1.08
CLN3-227ENST00000567495 RPS6P62753 249 aaKnown RBP21.79■■□□□ 1.08
CLN3-227ENST00000567495 GRM4Q14833 912 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 USH1GQ495M9 461 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 C1orf53Q5VUE5 145 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 CREB3L3Q68CJ9 461 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 FBXO11Q86XK2 927 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 MCF2L2Q86YR7 1114 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 DNERQ8NFT8 737 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 IGDCC4Q8TDY8 1250 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 VTA1Q9NP79 307 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 MRPL11Q9Y3B7 192 aaKnown RBP21.79■■□□□ 1.08
CLN3-227ENST00000567495 SYNRGQ9UMZ2 1314 aa21.79■■□□□ 1.08
CLN3-227ENST00000567495 MOXD2PA6NHM9 499 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 CALML3P27482 149 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 CST5P28325 142 aaPredicted RBP21.78■■□□□ 1.08
CLN3-227ENST00000567495 TNFAIP2Q03169 654 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 TROAPQ12815 778 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 QRICH1Q2TAL8 776 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 ERICH6BQ5W0A0 696 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 IQSEC1Q6DN90 963 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 SLC39A5Q6ZMH5 540 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 PCSK9Q8NBP7 692 aaKnown RBP21.78■■□□□ 1.08
CLN3-227ENST00000567495 KLHDC9Q8NEP7 349 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 NUP133Q8WUM0 1156 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 TMEM87BQ96K49 555 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 MAP3K14Q99558 947 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 UPF3AQ9H1J1 476 aaKnown RBP21.78■■□□□ 1.08
CLN3-227ENST00000567495 PRO3102Q9H379 93 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 VAT1LQ9HCJ6 419 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 MAD2L2Q9UI95 211 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 ZMYND8Q9ULU4 1186 aaPredicted RBP21.78■■□□□ 1.08
CLN3-227ENST00000567495 ASTN1O14525 1302 aa21.78■■□□□ 1.08
CLN3-227ENST00000567495 PLXNA1Q9UIW2 1896 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 A0A1W2PPC1 479 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 ALDH5A1P51649 535 aaPredicted RBP21.77■■□□□ 1.08
CLN3-227ENST00000567495 GJA9P57773 515 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 ANTXR2P58335 489 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 NKX3-2P78367 333 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 SNX17Q15036 470 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 NOL8Q76FK4 1167 aaKnown RBP21.77■■□□□ 1.08
CLN3-227ENST00000567495 CHST3Q7LGC8 479 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 STAG2Q8N3U4 1231 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 LENG1Q96BZ8 264 aaPredicted RBP21.77■■□□□ 1.08
CLN3-227ENST00000567495 MTMR8Q96EF0 704 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 AMNQ9BXJ7 453 aa21.77■■□□□ 1.08
CLN3-227ENST00000567495 ZBTB5O15062 677 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 PRC1O43663 620 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 C6orf222P0C671 652 aaPredicted RBP21.76■■□□□ 1.07
CLN3-227ENST00000567495 RTP1P59025 263 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 SLC30A10Q6XR72 485 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 FERMT2Q96AC1 680 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 PRKAG2Q9UGJ0 569 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 Q9Y3F1 56 aa21.76■■□□□ 1.07
CLN3-227ENST00000567495 DDAH1O94760 285 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 KIF5BP33176 963 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 BMP8BP34820 402 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 ACLYP53396 1101 aa21.75■■□□□ 1.07
CLN3-227ENST00000567495 GDF15Q99988 308 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms