RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZCCHC17Q9NP64 241 aaKnown RBP14.9□□□□□ -0.02
VPS4A-204ENST00000566354 PCDHAC2Q9Y5I4 1007 aa14.9□□□□□ -0.02
VPS4A-204ENST00000566354 V9GY48 417 aaPredicted RBP14.9□□□□□ -0.02
VPS4A-204ENST00000566354 CTAGE9A4FU28 777 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 USP17L12C9JPN9 530 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 USP17L21D6R901 530 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 GYPCP04921 128 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CALM1P0DP23 149 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CALM2P0DP24 149 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CALM3P0DP25 149 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 PRELPP51888 382 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 HNRNPH2P55795 449 aaKnown RBP14.89□□□□□ -0.03
VPS4A-204ENST00000566354 FKBP1AP62942 108 aaKnown RBP14.89□□□□□ -0.03
VPS4A-204ENST00000566354 SLC4A8Q2Y0W8 1093 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CTR9Q6PD62 1173 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 NIM1KQ8IY84 436 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 IQUBQ8NA54 791 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 VPS33BQ9H267 617 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 ATP8A2Q9NTI2 1148 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 LIMA1Q9UHB6 759 aaKnown RBP14.89□□□□□ -0.03
VPS4A-204ENST00000566354 ZNRF3Q9ULT6 936 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 PSMD14O00487 310 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CASP1P29466 404 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 USP5P45974 858 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 SPAG1Q07617 926 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 KIF4BQ2VIQ3 1234 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 EFCC1Q9HA90 598 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 MYO1AQ9UBC5 1043 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 MKRN1Q9UHC7 482 aaKnown RBP14.89□□□□□ -0.03
VPS4A-204ENST00000566354 RAB21Q9UL25 225 aa14.89□□□□□ -0.03
VPS4A-204ENST00000566354 CYP2D6P10635 497 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 CRKP46108 304 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 FXR1P51114 621 aaKnown RBP eCLIP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ATP2C1P98194 919 aaPredicted RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ZNF174Q15697 407 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 TTC38Q5R3I4 469 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 IFIT1BQ5T764 474 aaKnown RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 IQCA1Q86XH1 822 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 MAPKAPK5Q8IW41 473 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 TEX11Q8IYF3 940 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 SMYD4Q8IYR2 804 aaPredicted RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 MSL3Q8N5Y2 521 aaKnown RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 MSANTD4Q8NCY6 345 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 TNFRSF25Q93038 417 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 TEKT1Q969V4 418 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 SYT17Q9BSW7 474 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ZSWIM4Q9H7M6 989 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ANKZF1Q9H8Y5 726 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 MCM9Q9NXL9 1143 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ZBTB12Q9Y330 459 aaPredicted RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 N4BP3O15049 544 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ERLIN1O75477 346 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 PRDM1O75626 825 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 USP17L8P0C7I0 530 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 PCP11498 1178 aaKnown RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 TRIM14Q14142 442 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 ANKRD20A12PQ8NF67 263 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 PUF60Q9UHX1 559 aaKnown RBP14.88□□□□□ -0.03
VPS4A-204ENST00000566354 RWDD2AQ9UIY3 292 aa14.88□□□□□ -0.03
VPS4A-204ENST00000566354 IRX5P78411 483 aaPredicted RBP14.87□□□□□ -0.03
VPS4A-204ENST00000566354 TROAPQ12815 778 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 PTGDRQ13258 359 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 KRT31Q15323 416 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 APOBEC3HQ6NTF7 200 aaKnown RBP14.87□□□□□ -0.03
VPS4A-204ENST00000566354 HHIPL2Q6UWX4 724 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 CYP26C1Q6V0L0 522 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 EXOC4Q96A65 974 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 PSD3Q9NYI0 1048 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 CTNND2Q9UQB3 1225 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 NAV1Q8NEY1 1877 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 A0A0U1RQJ8 604 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 PLEKHA8P1O95397 391 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 TUBBP07437 444 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 VIL1P09327 827 aaKnown RBP14.87□□□□□ -0.03
VPS4A-204ENST00000566354 TRAPPC10P48553 1259 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 CXCL9Q07325 125 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 E2F4Q16254 413 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 WHAMMP3Q1A5X7 153 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 BEND6Q5SZJ8 279 aaPredicted RBP14.87□□□□□ -0.03
VPS4A-204ENST00000566354 RSBN1LQ6PCB5 846 aaPredicted RBP14.87□□□□□ -0.03
VPS4A-204ENST00000566354 HDXQ7Z353 690 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 ATRIPQ8WXE1 791 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 JDP2Q8WYK2 163 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 PLCD4Q9BRC7 762 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 ABHD10Q9NUJ1 306 aa14.87□□□□□ -0.03
VPS4A-204ENST00000566354 hCG_1642624A0A1W2PR95 340 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 WNT7AO00755 349 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 DDAH1O94760 285 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 FGRP09769 529 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 PLCG2P16885 1265 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 CCT6AP40227 531 aaKnown RBP14.86□□□□□ -0.03
VPS4A-204ENST00000566354 NPY5RQ15761 445 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 MUM1L1Q5H9M0 696 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 RRAGBQ5VZM2 374 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 SLC35F6Q8N357 371 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 NEK11Q8NG66 645 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 NAPGQ99747 312 aaPredicted RBP14.86□□□□□ -0.03
VPS4A-204ENST00000566354 SAP30BPQ9UHR5 308 aaKnown RBP14.86□□□□□ -0.03
VPS4A-204ENST00000566354 LTBP3Q9NS15 1303 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 LAMB1P07942 1786 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms