RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CBARPQ8N350 705 aaPredicted RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 BEND7Q8N7W2 519 aaPredicted RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 HSH2DQ96JZ2 352 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 NECAB3Q96P71 396 aaPredicted RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 SERINC2Q96SA4 455 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 DDX21Q9NR30 783 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 MAN1C1Q9NR34 630 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ARHGEF4Q9NR80 690 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 STRN4Q9NRL3 753 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 KANSL3Q9P2N6 904 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 RCAN3Q9UKA8 241 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 YEATS2Q9ULM3 1422 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 EIF2AK4Q9P2K8 1649 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 RPRD2Q5VT52 1461 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 UHRF1BP1Q6BDS2 1440 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 PHF20L1A8MW92 1017 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 GRIN3BO60391 1043 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CILPO75339 1184 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 PRKD3O94806 890 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 SETSIPP0DME0 302 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 MYBL2P10244 700 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 LPOP22079 712 aaPredicted RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CES1P23141 567 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 INPP5BP32019 993 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 IARSP41252 1262 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CTBSQ01459 385 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 GRB10Q13322 594 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 NEUROD1Q13562 356 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 KRT72Q14CN4 511 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ELF2Q15723 593 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 GPR158Q5T848 1215 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 HEATR6Q6AI08 1181 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 KRT77Q7Z794 578 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 RASSF3Q86WH2 238 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 FAM186BQ8IYM0 893 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 TNIP3Q96KP6 325 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 SUSD3Q96L08 255 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 TCF12Q99081 682 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 LIN7BQ9HAP6 207 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CRTAC1Q9NQ79 661 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 MARK1Q9P0L2 795 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 TNPO3Q9Y5L0 923 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CLSPNQ9HAW4 1339 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 LTBP3Q9NS15 1303 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ARHGAP31Q2M1Z3 1444 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 TRBV23-1A0A0A0MS06 115 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 PIK3R2O00459 728 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 APBA3O96018 575 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 MT-CO1P00395 513 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ASGR2P07307 311 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 U2AF1L5P0DN76 240 aaPredicted RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 GUCY2CP25092 1073 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ADH6P28332 368 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 GRNP28799 593 aaKnown RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 GJA9P57773 515 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 RPS26P62854 115 aaKnown RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 U2AF1Q01081 240 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ADCY1Q08828 1119 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 KCNMA1Q12791 1236 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 LDHAL6AQ6ZMR3 332 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ARMCX6Q7L4S7 300 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 STK11IPQ8N1F8 1099 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 CPA6Q8N4T0 437 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 GALNT6Q8NCL4 622 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 SNRNP27Q8WVK2 155 aaKnown RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 FUBP3Q96I24 572 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 MPHOSPH9Q99550 1183 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 TTC1Q99614 292 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 MIR1-1HGQ9H1L0 117 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 EHMT1Q9H9B1 1298 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ABI2Q9NYB9 513 aaPredicted RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 ANKRD6Q9Y2G4 727 aa6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 POLR3KQ9Y2Y1 108 aaPredicted RBP6.24□□□□□ -1.41
VPS35P1-201ENST00000563400 INO80Q9ULG1 1556 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 A0A1W2PQU0 124 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 hCG_1642624A0A1W2PR95 340 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 IQCA1LA6NCM1 817 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 SNUPNO95149 360 aaKnown RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 TGFB3P10600 412 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 PYGMP11217 842 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 CD33P20138 364 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 POU3F2P20265 443 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 AMPD1P23109 780 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 CCND1P24385 295 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 ALDH5A1P51649 535 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 ARSDP51689 593 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 CNGB1Q14028 1251 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 MAP7Q14244 749 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 PCBP2Q15366 365 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 SKOR2Q2VWA4 1001 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 DACT2Q5SW24 774 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 SLCO4C1Q6ZQN7 724 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 FGD2Q7Z6J4 655 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 CCDC84Q86UT8 332 aaPredicted RBP6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 EDARADDQ8WWZ3 215 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 USP7Q93009 1102 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 TTC17Q96AE7 1141 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 PGBD4Q96DM1 585 aa6.23□□□□□ -1.41
VPS35P1-201ENST00000563400 MRPL4Q9BYD3 311 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms