RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 MAML3Q96JK9 1138 aa19.43■□□□□ 0.7
CLK3-207ENST00000562389 SPZ1Q9BXG8 430 aa19.43■□□□□ 0.7
CLK3-207ENST00000562389 A1CFQ9NQ94 594 aaKnown RBP19.43■□□□□ 0.7
CLK3-207ENST00000562389 PFASO15067 1338 aa19.43■□□□□ 0.7
CLK3-207ENST00000562389 BAZ2BQ9UIF8 2168 aaKnown RBP19.43■□□□□ 0.7
CLK3-207ENST00000562389 KLF18A0A0U1RQI7 1052 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 ZBTB43O43298 467 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 TRIM32Q13049 653 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 MTFR1Q15390 333 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 MFSD14CQ5VZR4 134 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 FBXO11Q86XK2 927 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 RAB11FIP4Q86YS3 637 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 BRF1Q92994 677 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 RBM28Q9NW13 759 aaKnown RBP19.42■□□□□ 0.7
CLK3-207ENST00000562389 ABCB11O95342 1321 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 NID2Q14112 1375 aa19.42■□□□□ 0.7
CLK3-207ENST00000562389 CCL5P13501 91 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 APOBRQ0VD83 1088 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 USH1GQ495M9 461 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 TMTC3Q6ZXV5 915 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 CCDC144CPQ8IYA2 1237 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 CLEC4DQ8WXI8 215 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 PIGSQ96S52 555 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 AMNQ9BXJ7 453 aa19.41■□□□□ 0.7
CLK3-207ENST00000562389 UPF3BQ9BZI7 483 aaKnown RBP19.41■□□□□ 0.7
CLK3-207ENST00000562389 NFIBO00712 420 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 PLEKHA8P1O95397 391 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 MYCP01106 439 aaPredicted RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 PRKAR2AP13861 404 aaKnown RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 CACNB2Q08289 660 aaPredicted RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 RTN1Q16799 776 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 ZNF467Q7Z7K2 595 aaPredicted RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 HOMER1Q86YM7 354 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 SRBD1Q8N5C6 995 aaKnown RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 MSL3Q8N5Y2 521 aaKnown RBP19.4■□□□□ 0.7
CLK3-207ENST00000562389 TMEM106CQ9BVX2 250 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 MAF1Q9H063 256 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 UNC93B1Q9H1C4 597 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 CYP39A1Q9NYL5 469 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 RPTORQ8N122 1335 aa19.4■□□□□ 0.7
CLK3-207ENST00000562389 PNMA6FA0A0J9YX94 578 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 GOLGA8AA7E2F4 631 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 GOLGA8BA8MQT2 603 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 POTEB2H3BUK9 544 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 PPP1R11O60927 126 aaPredicted RBP19.39■□□□□ 0.69
CLK3-207ENST00000562389 EVCP57679 992 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 TRAF1Q13077 416 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 TOB2Q14106 344 aaPredicted RBP19.39■□□□□ 0.69
CLK3-207ENST00000562389 PPP2R5BQ15173 497 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 NSMFQ6X4W1 530 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 FAM133AQ8N9E0 248 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 RGS22Q8NE09 1264 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 FGD4Q96M96 766 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 RNF208Q9H0X6 261 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 HMX1Q9NP08 348 aaPredicted RBP19.39■□□□□ 0.69
CLK3-207ENST00000562389 PAK6Q9NQU5 681 aaPredicted RBP19.39■□□□□ 0.69
CLK3-207ENST00000562389 PDRG1Q9NUG6 133 aa19.39■□□□□ 0.69
CLK3-207ENST00000562389 MRPL11Q9Y3B7 192 aaKnown RBP19.39■□□□□ 0.69
CLK3-207ENST00000562389 CAPN15O75808 1086 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 CYP2C19P33261 490 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 CENPFP49454 3210 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 METAP2P50579 478 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLK3-207ENST00000562389 SOX10P56693 466 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 MAMDC4Q6UXC1 1216 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 RRP36Q96EU6 259 aaKnown RBP19.38■□□□□ 0.69
CLK3-207ENST00000562389 SYNGAP1Q96PV0 1343 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 TINF2Q9BSI4 451 aa19.38■□□□□ 0.69
CLK3-207ENST00000562389 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLK3-207ENST00000562389 MCM3APO60318 1980 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 FRMPD3Q5JV73 1810 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 CNTNAP5Q8WYK1 1306 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 PTPDC1A2A3K4 754 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 GJB1P08034 283 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 CYBAP13498 195 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 CNTN2Q02246 1040 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 RNF207Q6ZRF8 634 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 CMTR1Q8N1G2 835 aaKnown RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 ALDH8A1Q9H2A2 487 aaPredicted RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 FAM217BQ9NTX9 383 aaPredicted RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 SEC63Q9UGP8 760 aaKnown RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 NRBP1Q9UHY1 535 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 NAP1L2Q9ULW6 460 aaPredicted RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 PCDHA1Q9Y5I3 950 aa19.37■□□□□ 0.69
CLK3-207ENST00000562389 KIAA0100Q14667 2235 aaKnown RBP19.37■□□□□ 0.69
CLK3-207ENST00000562389 CCDC196A0A1B0GTZ2 297 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 POTEFA5A3E0 1075 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 CDC27P30260 824 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 BAATQ14032 418 aaPredicted RBP19.36■□□□□ 0.69
CLK3-207ENST00000562389 SLC30A10Q6XR72 485 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 MCF2L2Q86YR7 1114 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 LRRC37A2A6NM11 1700 aa19.36■□□□□ 0.69
CLK3-207ENST00000562389 SOWAHBA6NEL2 793 aa19.35■□□□□ 0.69
CLK3-207ENST00000562389 CCND3P30281 292 aaPredicted RBP19.35■□□□□ 0.69
CLK3-207ENST00000562389 GJA8P48165 433 aa19.35■□□□□ 0.69
CLK3-207ENST00000562389 RPS6P62753 249 aaKnown RBP19.35■□□□□ 0.69
CLK3-207ENST00000562389 GHRHRQ02643 423 aa19.35■□□□□ 0.69
CLK3-207ENST00000562389 FUT2Q10981 343 aa19.35■□□□□ 0.69
CLK3-207ENST00000562389 PIBF1Q8WXW3 757 aa19.35■□□□□ 0.69
CLK3-207ENST00000562389 ASTN1O14525 1302 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 LOC102724159A0A0B4J2E5 919 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms