RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GOLGA8BA8MQT2 603 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 CYTH3O43739 400 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 COBLO75128 1261 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 IGHA2P01877 340 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 CAPN2P17655 700 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 ANKRD1Q15327 319 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 ZNF792Q3KQV3 632 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 MFSD14CQ5VZR4 134 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 IL27Q8NEV9 243 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 RRP36Q96EU6 259 aaKnown RBP15.08■□□□□ 0
NEDD8-208ENST00000560427 VAT1LQ9HCJ6 419 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 A1CFQ9NQ94 594 aaKnown RBP15.08■□□□□ 0
NEDD8-208ENST00000560427 BIN2Q9UBW5 565 aaPredicted RBP15.08■□□□□ 0
NEDD8-208ENST00000560427 MRPL11Q9Y3B7 192 aaKnown RBP15.08■□□□□ 0
NEDD8-208ENST00000560427 DOCK3Q8IZD9 2030 aa15.08■□□□□ 0
NEDD8-208ENST00000560427 LOC102724159A0A0B4J2E5 919 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 PNMA6FA0A0J9YX94 578 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 RXRAP19793 462 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 RBM25P49756 843 aaKnown RBP15.07■□□□□ 0
NEDD8-208ENST00000560427 METAP2P50579 478 aaKnown RBP eCLIP15.07■□□□□ 0
NEDD8-208ENST00000560427 APOBRQ0VD83 1088 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 PWP2Q15269 919 aaKnown RBP15.07■□□□□ 0
NEDD8-208ENST00000560427 SLC35G1Q2M3R5 365 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 MAP3K21Q5TCX8 1036 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 MCF2L2Q86YR7 1114 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 SAMD3Q8N6K7 520 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 NPLOC4Q8TAT6 608 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 CLEC4DQ8WXI8 215 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 MAML3Q96JK9 1138 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 CYP39A1Q9NYL5 469 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 SEC63Q9UGP8 760 aaKnown RBP15.07■□□□□ 0
NEDD8-208ENST00000560427 NRBP1Q9UHY1 535 aa15.07■□□□□ 0
NEDD8-208ENST00000560427 POTEB2H3BUK9 544 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 PLEKHA8P1O95397 391 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 PGK2P07205 417 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 TOB2Q14106 344 aaPredicted RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 CCL14Q16627 93 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 USH1GQ495M9 461 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 MUM1L1Q5H9M0 696 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 HOMER1Q86YM7 354 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 CCDC144CPQ8IYA2 1237 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 SRBD1Q8N5C6 995 aaKnown RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 ZNF274Q96GC6 653 aaPredicted RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 PIGSQ96S52 555 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 C22orf23Q9BZE7 217 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 MAP3K20Q9NYL2 800 aaKnown RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 RBM27Q9P2N5 1060 aaKnown RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 NAP1L2Q9ULW6 460 aaPredicted RBP15.06■□□□□ 0
NEDD8-208ENST00000560427 SYNGAP1Q96PV0 1343 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 HTTP42858 3142 aa15.06■□□□□ 0
NEDD8-208ENST00000560427 CCDC85CA6NKD9 419 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 NFIBO00712 420 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 PRKAR2AP13861 404 aaKnown RBP15.05■□□□□ -0
NEDD8-208ENST00000560427 GHRHRQ02643 423 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 MAMDC4Q6UXC1 1216 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 NSMFQ6X4W1 530 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 RNF207Q6ZRF8 634 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 TEX2Q8IWB9 1127 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 FAM133AQ8N9E0 248 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 TINF2Q9BSI4 451 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 TMEM106CQ9BVX2 250 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 FLRT1Q9NZU1 646 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 ADD3Q9UEY8 706 aaKnown RBP15.05■□□□□ -0
NEDD8-208ENST00000560427 PCDHA1Q9Y5I3 950 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 RPTORQ8N122 1335 aa15.05■□□□□ -0
NEDD8-208ENST00000560427 RBBP6Q7Z6E9 1792 aaKnown RBP15.05■□□□□ -0
NEDD8-208ENST00000560427 CNTNAP5Q8WYK1 1306 aa15.04■□□□□ -0
NEDD8-208ENST00000560427 hCG_1984214I3L0E3 225 aa15.04■□□□□ -0
NEDD8-208ENST00000560427 PPP1R11O60927 126 aaPredicted RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 CCL5P13501 91 aa15.04■□□□□ -0
NEDD8-208ENST00000560427 PDIA3P30101 505 aaKnown RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 RAB11FIP4Q86YS3 637 aa15.04■□□□□ -0
NEDD8-208ENST00000560427 ZNF713Q8N859 430 aaPredicted RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 DNERQ8NFT8 737 aa15.04■□□□□ -0
NEDD8-208ENST00000560427 MPHOSPH6Q99547 160 aaKnown RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 HMX1Q9NP08 348 aaPredicted RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 PAK6Q9NQU5 681 aaPredicted RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 FAM217BQ9NTX9 383 aaPredicted RBP15.04■□□□□ -0
NEDD8-208ENST00000560427 PTPDC1A2A3K4 754 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 ASB14A6NK59 587 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 MSCO60682 206 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 GJB1P08034 283 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 CDC27P30260 824 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 RPS6P62753 249 aaKnown RBP15.03■□□□□ -0
NEDD8-208ENST00000560427 CACNB2Q08289 660 aaPredicted RBP15.03■□□□□ -0
NEDD8-208ENST00000560427 FUT2Q10981 343 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 PPP1R18Q6NYC8 613 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 FGD4Q96M96 766 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.03■□□□□ -0
NEDD8-208ENST00000560427 RNF208Q9H0X6 261 aa15.03■□□□□ -0
NEDD8-208ENST00000560427 PLXNA1Q9UIW2 1896 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 CYBAP13498 195 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 TAL1P17542 331 aaPredicted RBP15.02■□□□□ -0
NEDD8-208ENST00000560427 CYP2C19P33261 490 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 NEK4P51957 841 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 AK2P54819 239 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 BAATQ14032 418 aaPredicted RBP15.02■□□□□ -0
NEDD8-208ENST00000560427 MTFR1Q15390 333 aa15.02■□□□□ -0
NEDD8-208ENST00000560427 CPLX2Q6PUV4 134 aaKnown RBP15.02■□□□□ -0
NEDD8-208ENST00000560427 SLC30A10Q6XR72 485 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms