RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KCNH3Q9ULD8 1083 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 SAR1BQ9Y6B6 198 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 IL1R1P14778 569 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 APBA1Q02410 837 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 SNCBQ16143 134 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 RCSD1Q6JBY9 416 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 C3orf20Q8ND61 904 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 HAUS4Q9H6D7 363 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 BATF3Q9NR55 127 aa12.15□□□□□ -0.46
USP3-206ENST00000558157 PPP1R1BQ9UD71 204 aaPredicted RBP12.15□□□□□ -0.46
USP3-206ENST00000558157 GPAA1O43292 621 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 CDC27P30260 824 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 NAP1L1P55209 391 aaKnown RBP12.15□□□□□ -0.47
USP3-206ENST00000558157 TGFB2P61812 414 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 ITIH3Q06033 890 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 POSTNQ15063 836 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 PTPAQ15257 358 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 PTPN21Q16825 1174 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 APTXQ7Z2E3 356 aaKnown RBP12.15□□□□□ -0.47
USP3-206ENST00000558157 EPN3Q9H201 632 aa12.15□□□□□ -0.47
USP3-206ENST00000558157 ZMYM6O95789 1325 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 ANKRD33BA6NCL7 494 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 PRDX5P30044 214 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 FMR1Q06787 632 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP3-206ENST00000558157 GRIK3Q13003 919 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 LONRF3Q496Y0 759 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 C1orf131Q8NDD1 294 aaKnown RBP12.14□□□□□ -0.47
USP3-206ENST00000558157 EYA3Q99504 573 aa12.14□□□□□ -0.47
USP3-206ENST00000558157 ZC3H12CQ9C0D7 883 aaKnown RBP12.14□□□□□ -0.47
USP3-206ENST00000558157 ADD3Q9UEY8 706 aaKnown RBP12.14□□□□□ -0.47
USP3-206ENST00000558157 E7EWF7 191 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 HSPD1P10809 573 aaKnown RBP12.13□□□□□ -0.47
USP3-206ENST00000558157 MARCKSP29966 332 aaPredicted RBP12.13□□□□□ -0.47
USP3-206ENST00000558157 SPATA1Q5VX52 437 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 EMBQ6PCB8 327 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 ADGRA1Q86SQ6 560 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 ZNF384Q8TF68 577 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 RUFY1Q96T51 708 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 RTFDC1Q9BY42 306 aaPredicted RBP12.13□□□□□ -0.47
USP3-206ENST00000558157 SAMM50Q9Y512 469 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 ANO9A1A5B4 782 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 FOXP2O15409 715 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 MBD4O95243 580 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 CYP7A1P22680 504 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 SSR1P43307 286 aaKnown RBP12.13□□□□□ -0.47
USP3-206ENST00000558157 NNTQ13423 1086 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 DOK7Q18PE1 504 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 CC2D2BQ6DHV5 1058 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 KDM7AQ6ZMT4 941 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 CCDC13Q8IYE1 715 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 MAB21L3Q8N8X9 362 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 ARMC2Q8NEN0 867 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 WDR66Q8TBY9 1149 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 COA1Q9GZY4 146 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
USP3-206ENST00000558157 A0A0U1RQJ8 604 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 PAX7P23759 505 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 NAA35Q5VZE5 725 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 PARP9Q8IXQ6 854 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 MIGA1Q8NAN2 632 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 ACRBPQ8NEB7 543 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 ATRIPQ8WXE1 791 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 P3H4Q92791 437 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 AIDAQ96BJ3 306 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 NSUN4Q96CB9 384 aaKnown RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 SLC40A1Q9NP59 571 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 ZNF646O15015 1829 aaPredicted RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 KIF28PB7ZC32 967 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 TFRCP02786 760 aaKnown RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 GYPCP04921 128 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 TNFRSF8P28908 595 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 CASP14P31944 242 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 CLNS1AP54105 237 aaKnown RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 EPHB4P54760 987 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 MECOMQ03112 1051 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 GRIK5Q16478 980 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 NBPF9Q3BBW0 867 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 CDKAL1Q5VV42 579 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 TLDC1Q6P9B6 456 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 ZNF572Q7Z3I7 529 aaPredicted RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 SPATA20Q8TB22 786 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 MMS19Q96T76 1030 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 MAP3K14Q99558 947 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 SH3GL3Q99963 347 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 ARMT1Q9H993 441 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 SAMSN1Q9NSI8 373 aaKnown RBP12.12□□□□□ -0.47
USP3-206ENST00000558157 ABHD10Q9NUJ1 306 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 PIM2Q9P1W9 311 aa12.12□□□□□ -0.47
USP3-206ENST00000558157 HSF2BPO75031 334 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 BIRC2Q13490 618 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 LCORLQ8N3X6 602 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 MMGT1Q8N4V1 131 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 KRI1Q8N9T8 703 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 CAVIN3Q969G5 261 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 HOOK2Q96ED9 719 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 EHD4Q9H223 541 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 DBNDD1Q9H9R9 158 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 SPATS2LQ9NUQ6 558 aaKnown RBP12.11□□□□□ -0.47
USP3-206ENST00000558157 CD2APQ9Y5K6 639 aa12.11□□□□□ -0.47
USP3-206ENST00000558157 WDR19Q8NEZ3 1342 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms