RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 CCDC42Q96M95 316 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 SNX12Q9UMY4 172 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 FAM205AQ6ZU69 1335 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 RASSF10A6NK89 507 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 TRHP20396 242 aaPredicted RBP13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 CYP27A1Q02318 531 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 ITIH3Q06033 890 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 FAM47AQ5JRC9 791 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 CNOT6LQ96LI5 555 aaKnown RBP13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 CUEDC2Q9H467 287 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 MAGEF1Q9HAY2 307 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 DUSP10Q9Y6W6 482 aa13.19□□□□□ -0.3
VIPAS39-211ENST00000557658 PP2D1A8MPX8 630 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 PPP1R2P41236 205 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 KLK7P49862 253 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 PPFIA1Q13136 1202 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 CCDC96Q2M329 555 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 FKBP15Q5T1M5 1219 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 NOC4LQ9BVI4 516 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 LRWD1Q9UFC0 647 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 MYH1P12882 1939 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 ABCA3Q99758 1704 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 A0A087WUV0 522 aaPredicted RBP13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 CAVIN4Q5BKX8 364 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 ICE2Q659A1 982 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 GBP6Q6ZN66 633 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 SND1Q7KZF4 910 aaKnown RBP eCLIP13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 ZNF572Q7Z3I7 529 aaPredicted RBP13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 CREG2Q8IUH2 290 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 ERGIC2Q96RQ1 377 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 PLIN2Q99541 437 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 KAT14Q9H8E8 782 aa13.18□□□□□ -0.3
VIPAS39-211ENST00000557658 COL1A1P02452 1464 aaPredicted RBP13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 TSPY2A6NKD2 308 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 GOLGA8KD6RF30 607 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 ANKRD65E5RJM6 399 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 LAD1O00515 517 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 CPP00450 1065 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 PRLRP16471 622 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 IRAK1P51617 712 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 RASGRP4Q8TDF6 673 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 GPKOWQ92917 476 aaPredicted RBP eCLIP13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 TMEM60Q9H2L4 133 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 LAMB1P07942 1786 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 PHLPP1O60346 1717 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 OPA1O60313 960 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 PDE4DQ08499 809 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 UBE4AQ14139 1066 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 ANKRD40Q6AI12 368 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 TADA2BQ86TJ2 420 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 ZSCAN29Q8IWY8 852 aaPredicted RBP13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 CAPS2Q9BXY5 557 aa13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 IFIH1Q9BYX4 1025 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 CRNKL1Q9BZJ0 848 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-211ENST00000557658 LAMB2P55268 1798 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 MYH10P35580 1976 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 EBAG9O00559 213 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 TCP1P17987 556 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 PRPHP41219 470 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 MIIPQ5JXC2 388 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 TMED8Q6PL24 325 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 SH2D4AQ9H788 454 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 TCP11L1Q9NUJ3 509 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 ZNF263O14978 683 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 HNRNPH3P31942 346 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 SKIDA1Q1XH10 827 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 CCDC178Q5BJE1 867 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 GALNT17Q6IS24 598 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 SPATA4Q8NEY3 305 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 ZNF384Q8TF68 577 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 ALS2CR12Q96Q35 445 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 LRRC1Q9BTT6 524 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 DCP1AQ9NPI6 582 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 ARPP21Q9UBL0 812 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 PCDHA6Q9UN73 950 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 PLAGL2Q9UPG8 496 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 HYOU1Q9Y4L1 999 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 PCDHA8Q9Y5H6 950 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 PCDHA13Q9Y5I0 950 aa13.16□□□□□ -0.3
VIPAS39-211ENST00000557658 M0R2N6 131 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 NTSR2O95665 410 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 PLCG1P19174 1290 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 CCT5P48643 541 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 EPHB4P54760 987 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 ASIC1P78348 528 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 EVX2Q03828 476 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 SF3B2Q13435 895 aaKnown RBP13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 INF2Q27J81 1249 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 RCSD1Q6JBY9 416 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 EMBQ6PCB8 327 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 KRT26Q7Z3Y9 468 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 CABP7Q86V35 215 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 DAGLBQ8NCG7 672 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 EEF2KMTQ96G04 330 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 AK8Q96MA6 479 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 RUFY1Q96T51 708 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 SH3GL2Q99962 352 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 TRIM9Q9C026 710 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 ATP8A2Q9NTI2 1148 aa13.15□□□□□ -0.3
VIPAS39-211ENST00000557658 CAPN6Q9Y6Q1 641 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms