RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 NT5DC4Q86YG4 428 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 ZNF512BQ96KM6 892 aaPredicted RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 HDAC8Q9BY41 377 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 TANGO6Q9C0B7 1094 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.75□□□□□ -1.33
SRP54-211ENST00000556445 PPT2Q9UMR5 302 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 POLR1AO95602 1720 aaPredicted RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 MAP3K4Q9Y6R4 1608 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 PRDM15P57071 1507 aaPredicted RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 VWDEQ8N2E2 1590 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 NEURL4Q96JN8 1562 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 A2MP01023 1474 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 BCORL1Q5H9F3 1711 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 CCER2I3L3R5 266 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 KIF3BO15066 747 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 CLEC3AO75596 197 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 LTKP29376 864 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 ERVFC1P60507 584 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 TEKQ02763 1124 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 NBPF8Q3BBV2 869 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 C9orf131Q5VYM1 1079 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 CYB5RLQ6IPT4 315 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 TMC3Q7Z5M5 1100 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 ENOX1Q8TC92 643 aaKnown RBP6.74□□□□□ -1.33
SRP54-211ENST00000556445 SYTL5Q8TDW5 730 aaPredicted RBP6.74□□□□□ -1.33
SRP54-211ENST00000556445 KIRREL1Q96J84 757 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 SLC6A18Q96N87 628 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 SP110Q9HB58 689 aa6.74□□□□□ -1.33
SRP54-211ENST00000556445 RNF17Q9BXT8 1623 aaKnown RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 TRPM2O94759 1503 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 LMTK2Q8IWU2 1503 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 HPXP02790 462 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 ZGLP1P0C6A0 271 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 HK2P52789 917 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 IRX6P78412 446 aaPredicted RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 CLEC16AQ2KHT3 1053 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 GORABQ5T7V8 394 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 CCDC181Q5TID7 509 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 INTS3Q68E01 1043 aaKnown RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 SDE2Q6IQ49 451 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 TAB3Q8N5C8 712 aaPredicted RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 RBBP8NLQ8NC74 664 aaPredicted RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 DAGLBQ8NCG7 672 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 FERD3LQ96RJ6 166 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 GINM1Q9NU53 330 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.73□□□□□ -1.33
SRP54-211ENST00000556445 ZNF281Q9Y2X9 895 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 TBX22Q9Y458 520 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 PTPRTO14522 1441 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 SPATA31E1Q6ZUB1 1445 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 SPHKAPQ2M3C7 1700 aa6.73□□□□□ -1.33
SRP54-211ENST00000556445 ROCK2O75116 1388 aaKnown RBP6.72□□□□□ -1.33
SRP54-211ENST00000556445 E9PCH4 1651 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 GLI1P08151 1106 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 RASGRP4Q8TDF6 673 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 PRDM14Q9GZV8 571 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 KLHL42Q9P2K6 505 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 PLA2R1Q13018 1463 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 LAMC1P11047 1609 aa6.72□□□□□ -1.33
SRP54-211ENST00000556445 USP47Q96K76 1375 aa6.71□□□□□ -1.33
SRP54-211ENST00000556445 CEP152O94986 1710 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 PRAMEF1O95521 474 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 GJA8P48165 433 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 SOX9P48436 509 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 IGBP1P78318 339 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 COL9A2Q14055 689 aaPredicted RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 PTPROQ16827 1216 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 CCDC144BQ3MJ40 725 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 LSRQ86X29 649 aaPredicted RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 USHBP1Q8N6Y0 703 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 ZNF655Q8N720 491 aaPredicted RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 GPRASP2Q96D09 838 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 TCTN2Q96GX1 697 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 LIN37Q96GY3 246 aaPredicted RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 TM9SF2Q99805 663 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 TINF2Q9BSI4 451 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 CARD11Q9BXL7 1154 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 ASCC2Q9H1I8 757 aaPredicted RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 SUCOQ9UBS9 1254 aaKnown RBP6.71□□□□□ -1.34
SRP54-211ENST00000556445 EBF1Q9UH73 591 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 EFR3BQ9Y2G0 817 aa6.71□□□□□ -1.34
SRP54-211ENST00000556445 GPRASP1Q5JY77 1395 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 CCDC7Q96M83 1385 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 RICTORQ6R327 1708 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 DIP2BQ9P265 1576 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 PRAG1Q86YV5 1406 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 CNTLNQ9NXG0 1405 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 FAM86C2PA6NEL3 165 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 C9IYK1 514 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 SIGLEC6O43699 453 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 RAC2P15153 192 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 ZYXQ15942 572 aaKnown RBP6.7□□□□□ -1.34
SRP54-211ENST00000556445 TMEM67Q5HYA8 995 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 RNF111Q6ZNA4 994 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 RUFY4Q6ZNE9 571 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 SLC43A3Q8NBI5 491 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 ABHD4Q8TB40 342 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 DHX38Q92620 1227 aaKnown RBP6.7□□□□□ -1.34
SRP54-211ENST00000556445 ARMC5Q96C12 935 aa6.7□□□□□ -1.34
SRP54-211ENST00000556445 G6PC3Q9BUM1 346 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms