RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 CDC37Q16543 378 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-213ENST00000554600 RNF20Q5VTR2 975 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 CREB3L3Q68CJ9 461 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 ARMCX2Q7L311 632 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 ZNF467Q7Z7K2 595 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-213ENST00000554600 CCDC144CPQ8IYA2 1237 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 C7orf61Q8IZ16 206 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 ADGRF4Q8IZF3 695 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 MSL3Q8N5Y2 521 aaKnown RBP12.44□□□□□ -0.42
SHMT2-213ENST00000554600 SENP6Q9GZR1 1112 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-213ENST00000554600 XPNPEP3Q9NQH7 507 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 PPP4R2Q9NY27 417 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 NRBP1Q9UHY1 535 aa12.44□□□□□ -0.42
SHMT2-213ENST00000554600 WDR19Q8NEZ3 1342 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 ASB14A6NK59 587 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 KLRF2D3W0D1 207 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 NFIBO00712 420 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 PRC1O43663 620 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 SNAI1O95863 264 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-213ENST00000554600 ACVR2BQ13705 512 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 BAATQ14032 418 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-213ENST00000554600 MAMDC4Q6UXC1 1216 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 NFXL1Q6ZNB6 911 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 CATIPQ7Z7H3 387 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 MB21D2Q8IYB1 491 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-213ENST00000554600 STAG2Q8N3U4 1231 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 FAM133AQ8N9E0 248 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 NUP133Q8WUM0 1156 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 LENG1Q96BZ8 264 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-213ENST00000554600 FGD4Q96M96 766 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 SENP2Q9HC62 589 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 CYP39A1Q9NYL5 469 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 FAM184BQ9ULE4 1060 aa12.43□□□□□ -0.42
SHMT2-213ENST00000554600 SOWAHBA6NEL2 793 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 DNM1LO00429 736 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 PGK1P00558 417 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 ZNF865P0CJ78 1059 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-213ENST00000554600 MCM5P33992 734 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 ATN1P54259 1190 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-213ENST00000554600 ANTXR2P58335 489 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 QRICH1Q2TAL8 776 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 RNF207Q6ZRF8 634 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 NOL8Q76FK4 1167 aaKnown RBP12.42□□□□□ -0.42
SHMT2-213ENST00000554600 FBXO11Q86XK2 927 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 PURBQ96QR8 312 aaKnown RBP12.42□□□□□ -0.42
SHMT2-213ENST00000554600 ABHD16BQ9H3Z7 469 aa12.42□□□□□ -0.42
SHMT2-213ENST00000554600 ADD3Q9UEY8 706 aaKnown RBP12.42□□□□□ -0.42
SHMT2-213ENST00000554600 CCDC69A6NI79 296 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 COL6A1P12109 1028 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 GRM4Q14833 912 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 NECTIN1Q15223 517 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 LRRC41Q15345 812 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 CCDC144BQ3MJ40 725 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 SLC30A10Q6XR72 485 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 EEPD1Q7L9B9 569 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 RNF180Q86T96 592 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 HOMER1Q86YM7 354 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 FERMT2Q96AC1 680 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 JMJD4Q9H9V9 463 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 MAD2L2Q9UI95 211 aa12.41□□□□□ -0.42
SHMT2-213ENST00000554600 ZMYND8Q9ULU4 1186 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-213ENST00000554600 DDX49Q9Y6V7 483 aaKnown RBP12.41□□□□□ -0.42
SHMT2-213ENST00000554600 ABCB11O95342 1321 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 ADCYAP1R1P41586 468 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 RPS6P62753 249 aaKnown RBP12.4□□□□□ -0.42
SHMT2-213ENST00000554600 LRRC26Q2I0M4 334 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 ERICH6BQ5W0A0 696 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 ZNF654Q8IZM8 581 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 CTCFLQ8NI51 663 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-213ENST00000554600 IGDCC4Q8TDY8 1250 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 CLEC4DQ8WXI8 215 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 PIBF1Q8WXW3 757 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 TMEM87BQ96K49 555 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 MPHOSPH6Q99547 160 aaKnown RBP12.4□□□□□ -0.42
SHMT2-213ENST00000554600 MYL10Q9BUA6 226 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 LRRC2Q9BYS8 371 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 LY9Q9HBG7 655 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 SPC25Q9HBM1 224 aa12.4□□□□□ -0.42
SHMT2-213ENST00000554600 GPHNQ9NQX3 736 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-213ENST00000554600 MRPL11Q9Y3B7 192 aaKnown RBP12.4□□□□□ -0.42
SHMT2-213ENST00000554600 SYNRGQ9UMZ2 1314 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 PALM3A6NDB9 673 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-213ENST00000554600 SH2B2O14492 632 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-213ENST00000554600 C6orf222P0C671 652 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-213ENST00000554600 SYN1P17600 705 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 ALDH5A1P51649 535 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-213ENST00000554600 TNFAIP2Q03169 654 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 PDE4DQ08499 809 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 CHRDL2Q6WN34 429 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 RAB11FIP4Q86YS3 637 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 FBXO16Q8IX29 292 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-213ENST00000554600 TMTC2Q8N394 836 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 NEK1Q96PY6 1258 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 PIGSQ96S52 555 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 AMNQ9BXJ7 453 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 ATP11BQ9Y2G3 1177 aa12.39□□□□□ -0.43
SHMT2-213ENST00000554600 ASTN1O14525 1302 aa12.38□□□□□ -0.43
SHMT2-213ENST00000554600 DOCK5Q9H7D0 1870 aa12.38□□□□□ -0.43
SHMT2-213ENST00000554600 CUL9Q8IWT3 2517 aa12.38□□□□□ -0.43
SHMT2-213ENST00000554600 B4DLN1 442 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms