RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 NFIBO00712 420 aa26.52■■□□□ 1.84
TDP1-206ENST00000553569 C8orf34Q49A92 452 aa26.52■■□□□ 1.84
TDP1-206ENST00000553569 MAP3K21Q5TCX8 1036 aa26.52■■□□□ 1.84
TDP1-206ENST00000553569 APOA5Q6Q788 366 aa26.52■■□□□ 1.84
TDP1-206ENST00000553569 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.52■■□□□ 1.84
TDP1-206ENST00000553569 BRPF3Q9ULD4 1205 aa26.52■■□□□ 1.84
TDP1-206ENST00000553569 PFASO15067 1338 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 RPTORQ8N122 1335 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 DNAJC25-GNG10A0A024R161 153 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 KLF18A0A0U1RQI7 1052 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 PLEKHA8P1O95397 391 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 FBXO11Q86XK2 927 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 PIBF1Q8WXW3 757 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 RIOX1Q9H6W3 641 aa26.51■■□□□ 1.83
TDP1-206ENST00000553569 HMX1Q9NP08 348 aaPredicted RBP26.51■■□□□ 1.83
TDP1-206ENST00000553569 DIS3Q9Y2L1 958 aaKnown RBP26.51■■□□□ 1.83
TDP1-206ENST00000553569 POTEB2H3BUK9 544 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 CYTH3O43739 400 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 APOBRQ0VD83 1088 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 RUFY3Q7L099 469 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 CLEC4DQ8WXI8 215 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 BRF1Q92994 677 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 MTMR8Q96EF0 704 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 PIGSQ96S52 555 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 UPF3BQ9BZI7 483 aaKnown RBP26.5■■□□□ 1.83
TDP1-206ENST00000553569 ZSWIM6Q9HCJ5 1215 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 CYP46A1Q9Y6A2 500 aa26.5■■□□□ 1.83
TDP1-206ENST00000553569 LCTP09848 1927 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 ABCB11O95342 1321 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 PTPDC1A2A3K4 754 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 ZBTB5O15062 677 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 ZBTB43O43298 467 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 CCND3P30281 292 aaPredicted RBP26.49■■□□□ 1.83
TDP1-206ENST00000553569 GNAQP50148 359 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 CNTN2Q02246 1040 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 CMTR1Q8N1G2 835 aaKnown RBP26.49■■□□□ 1.83
TDP1-206ENST00000553569 FANCBQ8NB91 859 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 CYP39A1Q9NYL5 469 aa26.49■■□□□ 1.83
TDP1-206ENST00000553569 GOLGA8AA7E2F4 631 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 GOLGA8BA8MQT2 603 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 GJB1P08034 283 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 EN2P19622 333 aaPredicted RBP26.48■■□□□ 1.83
TDP1-206ENST00000553569 DEFB118Q96PH6 123 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 LZTS2Q9BRK4 669 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 AMNQ9BXJ7 453 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 TM6SF1Q9BZW5 370 aa26.48■■□□□ 1.83
TDP1-206ENST00000553569 PAK6Q9NQU5 681 aaPredicted RBP26.48■■□□□ 1.83
TDP1-206ENST00000553569 MCM3APO60318 1980 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 PPP1R11O60927 126 aaPredicted RBP26.47■■□□□ 1.83
TDP1-206ENST00000553569 IGHA2P01877 340 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 BAATQ14032 418 aaPredicted RBP26.47■■□□□ 1.83
TDP1-206ENST00000553569 RTN1Q16799 776 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 SLC30A10Q6XR72 485 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 SRBD1Q8N5C6 995 aaKnown RBP26.47■■□□□ 1.83
TDP1-206ENST00000553569 FAM133AQ8N9E0 248 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 FGD4Q96M96 766 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 TINF2Q9BSI4 451 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 SPZ1Q9BXG8 430 aa26.47■■□□□ 1.83
TDP1-206ENST00000553569 CNGA1P29973 690 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 PRAMEF19Q5SWL8 479 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 RNF207Q6ZRF8 634 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 TMTC3Q6ZXV5 915 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 CCDC82Q8N4S0 544 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 TRPV1Q8NER1 839 aa26.46■■□□□ 1.83
TDP1-206ENST00000553569 U2AF1L4Q8WU68 220 aaKnown RBP26.46■■□□□ 1.83
TDP1-206ENST00000553569 MRPL11Q9Y3B7 192 aaKnown RBP26.46■■□□□ 1.83
TDP1-206ENST00000553569 PNMA6FA0A0J9YX94 578 aa26.45■■□□□ 1.82
TDP1-206ENST00000553569 CYBAP13498 195 aa26.45■■□□□ 1.82
TDP1-206ENST00000553569 CALML3P27482 149 aa26.45■■□□□ 1.82
TDP1-206ENST00000553569 GJA8P48165 433 aa26.45■■□□□ 1.82
TDP1-206ENST00000553569 ANAPC15P60006 121 aa26.45■■□□□ 1.82
TDP1-206ENST00000553569 RRP36Q96EU6 259 aaKnown RBP26.45■■□□□ 1.82
TDP1-206ENST00000553569 PURBQ96QR8 312 aaKnown RBP26.45■■□□□ 1.82
TDP1-206ENST00000553569 RBM28Q9NW13 759 aaKnown RBP26.45■■□□□ 1.82
TDP1-206ENST00000553569 SOWAHBA6NEL2 793 aa26.44■■□□□ 1.82
TDP1-206ENST00000553569 ZNF467Q7Z7K2 595 aaPredicted RBP26.44■■□□□ 1.82
TDP1-206ENST00000553569 SHISA4Q96DD7 197 aa26.44■■□□□ 1.82
TDP1-206ENST00000553569 AGXT2Q9BYV1 514 aa26.44■■□□□ 1.82
TDP1-206ENST00000553569 SEC63Q9UGP8 760 aaKnown RBP26.44■■□□□ 1.82
TDP1-206ENST00000553569 PCDHA1Q9Y5I3 950 aa26.44■■□□□ 1.82
TDP1-206ENST00000553569 FRMPD3Q5JV73 1810 aa26.44■■□□□ 1.82
TDP1-206ENST00000553569 SGPL1O95470 568 aa26.43■■□□□ 1.82
TDP1-206ENST00000553569 SMARCA1P28370 1054 aa26.43■■□□□ 1.82
TDP1-206ENST00000553569 METAP2P50579 478 aaKnown RBP eCLIP26.43■■□□□ 1.82
TDP1-206ENST00000553569 TOB2Q14106 344 aaPredicted RBP26.43■■□□□ 1.82
TDP1-206ENST00000553569 FBXL16Q8N461 479 aa26.43■■□□□ 1.82
TDP1-206ENST00000553569 MSL3Q8N5Y2 521 aaKnown RBP26.43■■□□□ 1.82
TDP1-206ENST00000553569 PDRG1Q9NUG6 133 aa26.43■■□□□ 1.82
TDP1-206ENST00000553569 SYNGAP1Q96PV0 1343 aa26.42■■□□□ 1.82
TDP1-206ENST00000553569 hCG_1642624A0A1W2PR95 340 aa26.42■■□□□ 1.82
TDP1-206ENST00000553569 RPS6P62753 249 aaKnown RBP26.42■■□□□ 1.82
TDP1-206ENST00000553569 MAMDC4Q6UXC1 1216 aa26.42■■□□□ 1.82
TDP1-206ENST00000553569 ARMCX2Q7L311 632 aa26.42■■□□□ 1.82
TDP1-206ENST00000553569 CNPY2Q9Y2B0 182 aa26.42■■□□□ 1.82
TDP1-206ENST00000553569 ASTN1O14525 1302 aa26.41■■□□□ 1.82
TDP1-206ENST00000553569 CNTNAP5Q8WYK1 1306 aa26.41■■□□□ 1.82
TDP1-206ENST00000553569 TFRCP02786 760 aaKnown RBP26.41■■□□□ 1.82
TDP1-206ENST00000553569 RCAN1P53805 252 aa26.41■■□□□ 1.82
TDP1-206ENST00000553569 MCF2L2Q86YR7 1114 aa26.41■■□□□ 1.82
TDP1-206ENST00000553569 TBC1D5Q92609 795 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms