RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PDXDC2PQ6P474 469 aa29.84■■■□□ 2.37
CCDC88C-205ENST00000553403 BCS1LQ9Y276 419 aa29.84■■■□□ 2.37
CCDC88C-205ENST00000553403 RPS12P25398 132 aaKnown RBP29.83■■■□□ 2.37
CCDC88C-205ENST00000553403 QRICH1Q2TAL8 776 aa29.83■■■□□ 2.37
CCDC88C-205ENST00000553403 GSDMAQ96QA5 445 aa29.83■■■□□ 2.37
CCDC88C-205ENST00000553403 RAD21O60216 631 aa29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 AFMP43652 599 aa29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 BTNL9Q6UXG8 535 aa29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 ARHGEF10LQ9HCE6 1279 aa29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 ZNF280AP59817 542 aaPredicted RBP29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 CDC37Q16543 378 aaPredicted RBP29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 MYOZ2Q9NPC6 264 aa29.82■■■□□ 2.36
CCDC88C-205ENST00000553403 WNT10BO00744 389 aa29.81■■■□□ 2.36
CCDC88C-205ENST00000553403 BMP3P12645 472 aa29.81■■■□□ 2.36
CCDC88C-205ENST00000553403 TTC12Q9H892 705 aaPredicted RBP29.81■■■□□ 2.36
CCDC88C-205ENST00000553403 PSTPIP2Q9H939 334 aa29.81■■■□□ 2.36
CCDC88C-205ENST00000553403 PGAP2Q9UHJ9 254 aa29.81■■■□□ 2.36
CCDC88C-205ENST00000553403 GTPBP6O43824 516 aaPredicted RBP29.8■■■□□ 2.36
CCDC88C-205ENST00000553403 MAP3K10Q02779 954 aa29.8■■■□□ 2.36
CCDC88C-205ENST00000553403 DISC1Q9NRI5 854 aa29.8■■■□□ 2.36
CCDC88C-205ENST00000553403 UBA7P41226 1012 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 SYDE2Q5VT97 1194 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 ZNF830Q96NB3 372 aaPredicted RBP29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 TMEM39BQ9GZU3 492 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 ZBTB21Q9ULJ3 1066 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 A0A1W2PRG0 241 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 TNNI2P48788 182 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 TMX2Q9Y320 296 aa29.79■■■□□ 2.36
CCDC88C-205ENST00000553403 STAT6P42226 847 aa29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 CCDC186Q7Z3E2 898 aa29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 ENOX1Q8TC92 643 aaKnown RBP29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 NAP1L4Q99733 375 aaKnown RBP29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 HSD3B7Q9H2F3 369 aa29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 PCDHA1Q9Y5I3 950 aa29.78■■■□□ 2.36
CCDC88C-205ENST00000553403 ERCC5P28715 1186 aaPredicted RBP29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 KARSQ15046 597 aaKnown RBP29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 UBE2SQ16763 222 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 NBPF9Q3BBW0 867 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 RRAGBQ5VZM2 374 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 MCTP2Q6DN12 878 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 PPP4R3AQ6IN85 833 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 MTMR9Q96QG7 549 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 AMNQ9BXJ7 453 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 CUEDC2Q9H467 287 aa29.77■■■□□ 2.36
CCDC88C-205ENST00000553403 TMEM232C9JQI7 657 aa29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 EDIL3O43854 480 aa29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 PTGS1P23219 599 aa29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 NUP88Q99567 741 aaPredicted RBP29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 KCNF1Q9H3M0 494 aa29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 GOPCQ9HD26 462 aa29.76■■■□□ 2.36
CCDC88C-205ENST00000553403 MAGEF1Q9HAY2 307 aa29.76■■■□□ 2.35
CCDC88C-205ENST00000553403 MYL1P05976 194 aa29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 GCFC2P16383 781 aaKnown RBP29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 LMOD1P29536 600 aaPredicted RBP29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 CDC25AP30304 524 aa29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 CALCRLQ16602 461 aa29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 POTEDQ86YR6 584 aa29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 MTRQ99707 1265 aa29.75■■■□□ 2.35
CCDC88C-205ENST00000553403 PP2D1A8MPX8 630 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 CAP2P40123 477 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 FXR2P51116 673 aaKnown RBP eCLIP29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 FANCCQ00597 558 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 IKQ13123 557 aaPredicted RBP29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 CABP7Q86V35 215 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 FBXO11Q86XK2 927 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 IGSF22Q8N9C0 903 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 DPF2Q92785 391 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 IFNKQ9P0W0 207 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 NRBP1Q9UHY1 535 aa29.74■■■□□ 2.35
CCDC88C-205ENST00000553403 TNFAIP1Q13829 316 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 NAALADL2Q58DX5 795 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 ARHGAP27Q6ZUM4 889 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 RASSF8Q8NHQ8 419 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 SH2D4AQ9H788 454 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 RMND1Q9NWS8 449 aa29.73■■■□□ 2.35
CCDC88C-205ENST00000553403 SEMA3FQ13275 785 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 AP3B2Q13367 1082 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 CDAN1Q8IWY9 1227 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 ACER1Q8TDN7 264 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 XPO4Q9C0E2 1151 aaKnown RBP29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 IMPACTQ9P2X3 320 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 SHTN1A0MZ66 631 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 FZD9O00144 591 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 CBFA2T2O43439 604 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 TDP2O95551 362 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 CASP1P29466 404 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 ECE1P42892 770 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 FMR1Q06787 632 aaKnown RBP eCLIP29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 TRAF1Q13077 416 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 TMEM266Q2M3C6 531 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 TEX2Q8IWB9 1127 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 FANCLQ9NW38 375 aa29.72■■■□□ 2.35
CCDC88C-205ENST00000553403 CUL4BQ13620 913 aa29.71■■■□□ 2.35
CCDC88C-205ENST00000553403 MIGA2Q7L4E1 593 aa29.71■■■□□ 2.35
CCDC88C-205ENST00000553403 STAMQ92783 540 aa29.71■■■□□ 2.35
CCDC88C-205ENST00000553403 SLC37A4O43826 429 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 TECP42680 631 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 USP11P51784 963 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 PDIA5Q14554 519 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 RASA3Q14644 834 aa29.7■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms