RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LARP1BQ659C4 914 aaKnown RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L2Q6R6M4 530 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 OTOP1Q7RTM1 612 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 CTU1Q7Z7A3 348 aaKnown RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 ZNF444Q8N0Y2 327 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 SPICE1Q8N0Z3 855 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 ANKRD13CQ8N6S4 541 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 IQUBQ8NA54 791 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 MNS1Q8NEH6 495 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 BICD2Q8TD16 824 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 SMCR8Q8TEV9 937 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 EXOC4Q96A65 974 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 PPP1R13BQ96KQ4 1090 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 RNF216Q9NWF9 866 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 PSD3Q9NYI0 1048 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 SLC45A1Q9Y2W3 748 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 TRIM17Q9Y577 477 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 BECN2A8MW95 431 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 SEC31AO94979 1220 aaKnown RBP8.7□□□□□ -1.02
LIMA1-216ENST00000552909 PDCP20941 246 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 PSMA5P28066 241 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 LACTBP83111 547 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-216ENST00000552909 TSGA10IPQ3SY00 556 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 FERMT3Q86UX7 667 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 CEP95Q96GE4 821 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 C12orf42Q96LP6 360 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 SRRTQ9BXP5 876 aaKnown RBP8.7□□□□□ -1.02
LIMA1-216ENST00000552909 KANSL2Q9H9L4 492 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 PDRG1Q9NUG6 133 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 ANAPC4Q9UJX5 808 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 TAOK2Q9UL54 1235 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMA1-216ENST00000552909 TMX2Q9Y320 296 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 JRKLQ9Y4A0 524 aa8.7□□□□□ -1.02
LIMA1-216ENST00000552909 GREB1LQ9C091 1923 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-216ENST00000552909 IGKV6D-41A0A0C4DH26 115 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 NMT2O60551 498 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 NR1I2O75469 434 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 IVLP07476 585 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 LMAN1P49257 510 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TFAP4Q01664 338 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 PDE4BQ07343 736 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 STX1AQ16623 288 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 E4F1Q66K89 784 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TM6SF1Q9BZW5 370 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 ZSWIM6Q9HCJ5 1215 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TXNRD2Q9NNW7 524 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 IL17RBQ9NRM6 502 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 CYP46A1Q9Y6A2 500 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 EFCAB8A8MWE9 144 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 ZNF213O14771 459 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 NRDCO43847 1150 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 FGRP09769 529 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TSPY3P0CV98 308 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TSPY8P0CW00 308 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 ACTN2P35609 894 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 MAGEA9P43362 315 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 USP14P54578 494 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 HERVK_113P62684 666 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 COL9A3Q14050 684 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-216ENST00000552909 Q3C1V9 767 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 FAM173BQ6P4H8 233 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 LEKR1Q6ZMV7 388 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 CATSPERGQ6ZRH7 1159 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TBC1D10CQ8IV04 446 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 REXO1L1PQ8IX06 675 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 CCDC150Q8NCX0 1101 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 NEDD1Q8NHV4 660 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 LEO1Q8WVC0 666 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-216ENST00000552909 ABHD8Q96I13 439 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 TRIM47Q96LD4 638 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 RPAP3Q9H6T3 665 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-216ENST00000552909 ARHGEF10LQ9HCE6 1279 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 MTMR4Q9NYA4 1195 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 IMPACTQ9P2X3 320 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 PNMA3Q9UL41 463 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 PHLPP2Q6ZVD8 1323 aa8.69□□□□□ -1.02
LIMA1-216ENST00000552909 DNAH12Q6ZR08 3092 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 RAD21O60216 631 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 RANBP6O60518 1105 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 TADA3O75528 432 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 CAPN15O75808 1086 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 SASH3O75995 380 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 SLC3A2P08195 630 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 OSBPP22059 807 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 PSMC4P43686 418 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 KCNJ6P48051 423 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 PABPC4Q13310 644 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 KRT32Q14532 448 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 DHX8Q14562 1220 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 IMMTQ16891 758 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 RRP12Q5JTH9 1297 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 CC2D1AQ6P1N0 951 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 BLOC1S2Q6QNY1 142 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 C11orf57Q6ZUT1 292 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 HOMER1Q86YM7 354 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 NEK1Q96PY6 1258 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 VCPKMTQ9H867 229 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 ZNF287Q9HBT7 754 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 TOMM22Q9NS69 142 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms