RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RIC8AQ9NPQ8 531 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 RBPJLQ9UBG7 517 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 PCDHA1Q9Y5I3 950 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 WDR33Q9C0J8 1336 aaKnown RBP11.03□□□□□ -0.64
LIMA1-211ENST00000552338 MYH7BA7E2Y1 1941 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 OPLAHO14841 1288 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 SLC25A27O95847 323 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 ZSCAN22P10073 491 aaPredicted RBP11.02□□□□□ -0.65
LIMA1-211ENST00000552338 IKQ13123 557 aaPredicted RBP11.02□□□□□ -0.65
LIMA1-211ENST00000552338 POTEHQ6S545 545 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 HOMER1Q86YM7 354 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 CHST13Q8NET6 341 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 BICD2Q8TD16 824 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 CLEC4DQ8WXI8 215 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 CAPNS2Q96L46 248 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 PARK7Q99497 189 aaKnown RBP11.02□□□□□ -0.65
LIMA1-211ENST00000552338 TEX13BQ9BXU2 312 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 VPS54Q9P1Q0 977 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 BTBD7Q9P203 1132 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 PCDHA4Q9UN74 947 aa11.02□□□□□ -0.65
LIMA1-211ENST00000552338 MRPL11Q9Y3B7 192 aaKnown RBP11.02□□□□□ -0.65
LIMA1-211ENST00000552338 LCTP09848 1927 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 DOCK3Q8IZD9 2030 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 hCG_1642624A0A1W2PR95 340 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 SMCO2A6NFE2 343 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 MEIS2O14770 477 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 CA12O43570 354 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 TLR2O60603 784 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 BCRP11274 1271 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 STAT3P40763 770 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 HSD17B4P51659 736 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 MRPL12P52815 198 aaKnown RBP11.01□□□□□ -0.65
LIMA1-211ENST00000552338 KIF23Q02241 960 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-211ENST00000552338 TRIM29Q14134 588 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 FAM110CQ1W6H9 321 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 ATL3Q6DD88 541 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 CYP4F22Q6NT55 531 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 BLIDQ8IZY5 108 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 COA7Q96BR5 231 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 C6orf50Q9HD87 102 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 TXNRD2Q9NNW7 524 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 FBXO40Q9UH90 709 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 MORC2Q9Y6X9 1032 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-211ENST00000552338 MGAMO43451 1857 aa11.01□□□□□ -0.65
LIMA1-211ENST00000552338 ZNF236Q9UL36 1845 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 F13A1P00488 732 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 FOSP01100 380 aaPredicted RBP11□□□□□ -0.65
LIMA1-211ENST00000552338 HSPA6P17066 643 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 NAPAP54920 295 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 NLRP5P59047 1200 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 C1QTNF8P60827 252 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 ERVK-9P63128 1117 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 ERVK-24P63145 666 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 RESTQ13127 1097 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 AP3B2Q13367 1082 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 PKP1Q13835 747 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 Q3C1V9 767 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 NOM1Q5C9Z4 860 aaKnown RBP11□□□□□ -0.65
LIMA1-211ENST00000552338 C17orf99Q6UX52 265 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 HEATR3Q7Z4Q2 680 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 BRAPQ7Z569 592 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 MCF2L2Q86YR7 1114 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 SPRYD3Q8NCJ5 442 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 CRYGNQ8WXF5 182 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 GPKOWQ92917 476 aaPredicted RBP eCLIP11□□□□□ -0.65
LIMA1-211ENST00000552338 AGBL1Q96MI9 1066 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 SPATC1LQ9H0A9 340 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 PSTPIP2Q9H939 334 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 RAVER2Q9HCJ3 691 aaKnown RBP11□□□□□ -0.65
LIMA1-211ENST00000552338 GJB4Q9NTQ9 266 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 CCPG1Q9ULG6 757 aa11□□□□□ -0.65
LIMA1-211ENST00000552338 LOC102724159A0A0B4J2E5 919 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 BTBD18B2RXH4 712 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 H3BQV1 296 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 DTNBO60941 627 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 PPFIA3O75145 1194 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 KRT2P35908 639 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 ADCY7P51828 1080 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 PWP2Q15269 919 aaKnown RBP10.99□□□□□ -0.65
LIMA1-211ENST00000552338 SAFBQ15424 915 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIMA1-211ENST00000552338 IFFO2Q5TF58 517 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 DIS3L2Q8IYB7 885 aaKnown RBP10.99□□□□□ -0.65
LIMA1-211ENST00000552338 ABRAQ8N0Z2 381 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 CUL5Q93034 780 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 ZIC5Q96T25 663 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 MROH8Q9H579 483 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 ZFYVE28Q9HCC9 887 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 BRMS1Q9HCU9 246 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 PCDHA6Q9UN73 950 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 KCNJ14Q9UNX9 436 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 RIPK3Q9Y572 518 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 PCDHA8Q9Y5H6 950 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 FRMPD4Q14CM0 1322 aa10.99□□□□□ -0.65
LIMA1-211ENST00000552338 PLXNB2O15031 1838 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 STRNO43815 780 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 CYP2C8P10632 490 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 TRAPPC10P48553 1259 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 VEGFBP49765 207 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 SNAP25P60880 206 aa10.98□□□□□ -0.65
LIMA1-211ENST00000552338 CCNA1P78396 465 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms