RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 USP17L21D6R901 530 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 NDUFB10O96000 172 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 CSPP1Q1MSJ5 1256 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 IQSEC1Q6DN90 963 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 SPRED2Q7Z698 418 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 TRMT13Q9NUP7 481 aaKnown RBP14.34□□□□□ -0.11
PTCH1-222ENST00000551425 NYAP2Q9P242 653 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 TNNQ9UQP3 1299 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 TNKSO95271 1327 aa14.34□□□□□ -0.11
PTCH1-222ENST00000551425 MCM3APO60318 1980 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 SOWAHBA6NEL2 793 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 PITPNM1O00562 1244 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 BAIAP3O94812 1187 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 PTGS1P23219 599 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 SSTR3P32745 418 aaPredicted RBP14.33□□□□□ -0.12
PTCH1-222ENST00000551425 AACSQ86V21 672 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.33□□□□□ -0.12
PTCH1-222ENST00000551425 KIFC2Q96AC6 838 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 MYH8P13535 1937 aa14.33□□□□□ -0.12
PTCH1-222ENST00000551425 POTEB3A0JP26 581 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 MBD4O95243 580 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 IQCF3P0C7M6 154 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 TAPT1Q6NXT6 567 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 POTEBQ6S5H4 581 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 GDPD5Q8WTR4 605 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 CLUAP1Q96AJ1 413 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 ACAD9Q9H845 621 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 A1CFQ9NQ94 594 aaKnown RBP14.32□□□□□ -0.12
PTCH1-222ENST00000551425 PDGFCQ9NRA1 345 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 FEM1BQ9UK73 627 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 ZBED9Q6R2W3 1325 aa14.32□□□□□ -0.12
PTCH1-222ENST00000551425 COL4A4P53420 1690 aaPredicted RBP14.31□□□□□ -0.12
PTCH1-222ENST00000551425 GOLIM4O00461 696 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 DCXO43602 365 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 FDX1P10109 184 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 CTR9Q6PD62 1173 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 TMEM57Q8N5G2 664 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.31□□□□□ -0.12
PTCH1-222ENST00000551425 DDRGK1Q96HY6 314 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 FTOQ9C0B1 505 aaKnown RBP eCLIP14.31□□□□□ -0.12
PTCH1-222ENST00000551425 HOMER2Q9NSB8 354 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 POLR3EQ9NVU0 708 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 WDFY4Q6ZS81 3184 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 BRWD1Q9NSI6 2320 aa14.31□□□□□ -0.12
PTCH1-222ENST00000551425 LCHNA4D1U4 455 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 GRXCR2A6NFK2 248 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 IL9P15248 144 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 KCNA5P22460 613 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 ADD2P35612 726 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 PURAQ00577 322 aaKnown RBP14.3□□□□□ -0.12
PTCH1-222ENST00000551425 PUS10Q3MIT2 529 aaKnown RBP14.3□□□□□ -0.12
PTCH1-222ENST00000551425 TMEM63BQ5T3F8 832 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 PTCRAQ6ISU1 281 aaPredicted RBP14.3□□□□□ -0.12
PTCH1-222ENST00000551425 ERC1Q8IUD2 1116 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 RETREG2Q8NC44 543 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 SUGCTQ9HAC7 445 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 VTA1Q9NP79 307 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 SYNPO2Q9UMS6 1093 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 COG6Q9Y2V7 657 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 ZNF536O15090 1300 aa14.3□□□□□ -0.12
PTCH1-222ENST00000551425 GREB1LQ9C091 1923 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-222ENST00000551425 RASA1P20936 1047 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 KCNJ6P48051 423 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 ERVK-21P61565 698 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 DUSP28Q4G0W2 176 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 FBXO16Q8IX29 292 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-222ENST00000551425 RPAP2Q8IXW5 612 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-222ENST00000551425 MORC4Q8TE76 937 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 FRAT1Q92837 279 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-222ENST00000551425 MKL1Q969V6 931 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 C1orf115Q9H7X2 142 aa14.29□□□□□ -0.12
PTCH1-222ENST00000551425 IGKV6D-41A0A0C4DH26 115 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 WDR5P61964 334 aaKnown RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 BFSP2Q13515 415 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 SCN5AQ14524 2016 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 LRRFIP1Q32MZ4 808 aaKnown RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 TKFCQ3LXA3 575 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 SLFNL1Q499Z3 407 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 NFRKBQ6P4R8 1299 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 KIAA1211Q6ZU35 1233 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 EEPD1Q7L9B9 569 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 GMCL1P1Q8NEA9 526 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 TGS1Q96RS0 853 aaKnown RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 DNAJC2Q99543 621 aaKnown RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 MTG1Q9BT17 334 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 RNF146Q9NTX7 359 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 ARPP21Q9UBL0 812 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 CLIP2Q9UDT6 1046 aa14.28□□□□□ -0.12
PTCH1-222ENST00000551425 DDX49Q9Y6V7 483 aaKnown RBP14.28□□□□□ -0.12
PTCH1-222ENST00000551425 BAZ2AQ9UIF9 1905 aaKnown RBP14.27□□□□□ -0.12
PTCH1-222ENST00000551425 CPT1AP50416 773 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 PTPN11Q06124 597 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-222ENST00000551425 NBPF20Q3BBV1 942 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 NEK9Q8TD19 979 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 RAD9AQ99638 391 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 ZBED2Q9BTP6 218 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 SLC4A4Q9Y6R1 1079 aa14.27□□□□□ -0.13
PTCH1-222ENST00000551425 GJB5O95377 273 aa14.26□□□□□ -0.13
PTCH1-222ENST00000551425 MYL3P08590 195 aa14.26□□□□□ -0.13
PTCH1-222ENST00000551425 SBK1Q52WX2 424 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms