RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 GJC2Q5T442 439 aaPredicted RBP9.12□□□□□ -0.95
NEK3-201ENST00000550331 C20orf194Q5TEA3 1177 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 C1orf53Q5VUE5 145 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 SLC39A5Q6ZMH5 540 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 APPBP2Q92624 585 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 MMP19Q99542 508 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.12□□□□□ -0.95
NEK3-201ENST00000550331 PRDM5Q9NQX1 630 aaPredicted RBP9.12□□□□□ -0.95
NEK3-201ENST00000550331 FBXO28Q9NVF7 368 aa9.12□□□□□ -0.95
NEK3-201ENST00000550331 ZNF214Q9UL59 606 aaPredicted RBP9.12□□□□□ -0.95
NEK3-201ENST00000550331 GSG1L2A8MUP6 293 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 GNAT2P19087 354 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 RASA1P20936 1047 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 STAT3P40763 770 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 FAM83BQ5T0W9 1011 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 MSL3Q8N5Y2 521 aaKnown RBP9.11□□□□□ -0.95
NEK3-201ENST00000550331 REPS2Q8NFH8 660 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 DDX12PQ92771 950 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 TINF2Q9BSI4 451 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 ZNF287Q9HBT7 754 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 PKD2L1Q9P0L9 805 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 NYAP2Q9P242 653 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 RAPGEFL1Q9UHV5 662 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 SYNPO2Q9UMS6 1093 aa9.11□□□□□ -0.95
NEK3-201ENST00000550331 IGKV6D-41A0A0C4DH26 115 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 F5H6K3 240 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 ATP2A1O14983 1001 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 RNF113AO15541 343 aaKnown RBP9.1□□□□□ -0.95
NEK3-201ENST00000550331 GPAA1O43292 621 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 NDUFB10O96000 172 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 PGK2P07205 417 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 RARBP10826 455 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 KLRC3Q07444 240 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 LRRC41Q15345 812 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 LRRFIP1Q32MZ4 808 aaKnown RBP9.1□□□□□ -0.95
NEK3-201ENST00000550331 ZNF792Q3KQV3 632 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 FAM47AQ5JRC9 791 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 PRAMEF19Q5SWL8 479 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 ANO1Q5XXA6 986 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 PRPF38AQ8NAV1 312 aaKnown RBP9.1□□□□□ -0.95
NEK3-201ENST00000550331 BADQ92934 168 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 OSBP2Q969R2 916 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 SLF1Q9BQI6 1058 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 TEX13BQ9BXU2 312 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 DCTPP1Q9H773 170 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 MKNK2Q9HBH9 465 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 EPB41L4AQ9HCS5 686 aaPredicted RBP9.1□□□□□ -0.95
NEK3-201ENST00000550331 XPNPEP3Q9NQH7 507 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 PHF24Q9UPV7 400 aa9.1□□□□□ -0.95
NEK3-201ENST00000550331 TTC41PQ6P2S7 1318 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 MINDY4BA8MYZ0 360 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 RAD21O60216 631 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 S1PR4O95977 384 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 ZNF865P0CJ78 1059 aaPredicted RBP9.09□□□□□ -0.95
NEK3-201ENST00000550331 AKR1A1P14550 325 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 ADCYAP1R1P41586 468 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 TDO2P48775 406 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 NBR1Q14596 966 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 TRIM60Q495X7 471 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.09□□□□□ -0.95
NEK3-201ENST00000550331 RNF180Q86T96 592 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 USP38Q8NB14 1042 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 ZSCAN1Q8NBB4 408 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 MKL1Q969V6 931 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 NUP88Q99567 741 aaPredicted RBP9.09□□□□□ -0.95
NEK3-201ENST00000550331 PDLIM7Q9NR12 457 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 CNPY2Q9Y2B0 182 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 PLIN4Q96Q06 1357 aa9.09□□□□□ -0.95
NEK3-201ENST00000550331 SYNGAP1Q96PV0 1343 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 DNAJC25-GNG10A0A024R161 153 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 TMEM265A0A087WTH1 108 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 PATL2C9JE40 543 aaKnown RBP9.08□□□□□ -0.96
NEK3-201ENST00000550331 ERC2O15083 957 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 TLL1O43897 1013 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 SLC4A3P48751 1232 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 OAZ1P54368 228 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 TSHZ3Q63HK5 1081 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 SNRNP48Q6IEG0 339 aaKnown RBP9.08□□□□□ -0.96
NEK3-201ENST00000550331 BLOC1S3Q6QNY0 202 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 MAMDC4Q6UXC1 1216 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 ZNF444Q8N0Y2 327 aaPredicted RBP9.08□□□□□ -0.96
NEK3-201ENST00000550331 GMCL1P1Q8NEA9 526 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 RNPC3Q96LT9 517 aaKnown RBP9.08□□□□□ -0.96
NEK3-201ENST00000550331 NACAP1Q9BZK3 213 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 MTMR4Q9NYA4 1195 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 CLIP2Q9UDT6 1046 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 TACC3Q9Y6A5 838 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 SMCHD1A6NHR9 2005 aa9.08□□□□□ -0.96
NEK3-201ENST00000550331 GREB1LQ9C091 1923 aaPredicted RBP9.07□□□□□ -0.96
NEK3-201ENST00000550331 ZNFX1Q9P2E3 1918 aaKnown RBP9.07□□□□□ -0.96
NEK3-201ENST00000550331 PLXNA1Q9UIW2 1896 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 TRIM43BA6NCK2 446 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 M0R2C6 588 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 ZBED4O75132 1171 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 ADAMTS4O75173 837 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 TTLL1O95922 423 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 APPP05067 770 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 SLC3A2P08195 630 aaKnown RBP9.07□□□□□ -0.96
NEK3-201ENST00000550331 CLTBP09497 229 aa9.07□□□□□ -0.96
NEK3-201ENST00000550331 FDX1P10109 184 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms