RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 TTLL1O95922 423 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 GOLGA8HP0CJ92 632 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 NR5A1Q13285 461 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 SHC4Q6S5L8 630 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 C11orf57Q6ZUT1 292 aaPredicted RBP18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 OXER1Q8TDS5 423 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 VPS54Q9P1Q0 977 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 KCNH4Q9UQ05 1017 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 MYH4Q9Y623 1939 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 GDF11O95390 407 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 MOGSQ13724 837 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 USP17L2Q6R6M4 530 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 LRRC47Q8N1G4 583 aaKnown RBP18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 PIBF1Q8WXW3 757 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 ERCC4Q92889 916 aaPredicted RBP18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 SHISA4Q96DD7 197 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 KIAA1468Q9P260 1216 aa18.9■□□□□ 0.62
CHMP1A-204ENST00000547687 CCDC85CA6NKD9 419 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 ZNF500O60304 480 aaPredicted RBP18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 SYKP43405 635 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 GNAQP50148 359 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 IQCB1Q15051 598 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 RESP18Q5W5W9 173 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 CTU1Q7Z7A3 348 aaKnown RBP18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 TIGD1Q96MW7 591 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 CLIC6Q96NY7 704 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 PHF20Q9BVI0 1012 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 HPSEQ9Y251 543 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 AFG3L2Q9Y4W6 797 aa18.89■□□□□ 0.61
CHMP1A-204ENST00000547687 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.89■□□□□ 0.615e-7■■□□□ 12.9
CHMP1A-204ENST00000547687 FAM237AA0A1B0GTK4 181 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 PARP1P09874 1014 aaKnown RBP18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 CAP2P40123 477 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 SLC35G1Q2M3R5 365 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 KRI1Q8N9T8 703 aaKnown RBP18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 USP17L5A8MUK1 530 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 KLRF2D3W0D1 207 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 GOLGA6L19H0YKK7 550 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 CYTH3O43739 400 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 KRT2P35908 639 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 ATP2B2Q01814 1243 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 GADL1Q6ZQY3 521 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 CD99L2Q8TCZ2 262 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 CABP5Q9NP86 173 aa18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 HERC5Q9UII4 1024 aaKnown RBP18.88■□□□□ 0.61
CHMP1A-204ENST00000547687 PDHXO00330 501 aa18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 PDHBP11177 359 aa18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 ZRSR1Q15695 479 aaKnown RBP18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 CPVLQ9H3G5 476 aa18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 ZFYVE28Q9HCC9 887 aa18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 MKI67P46013 3256 aaKnown RBP18.87■□□□□ 0.61
CHMP1A-204ENST00000547687 A0A087WWV3 80 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 SCG2P13521 617 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 SEPT2Q15019 361 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 PFKFB3Q16875 520 aaPredicted RBP18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 ABCB5Q2M3G0 1257 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 CEP57L1Q8IYX8 460 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 NAT10Q9H0A0 1025 aaKnown RBP18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 CEP131Q9UPN4 1083 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 PCDHB6Q9Y5E3 794 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 CYP2C8P10632 490 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 SPP2Q13103 211 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 GPAT2Q6NUI2 795 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 TMEM179Q6ZVK1 233 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 ZNF830Q96NB3 372 aaPredicted RBP18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 TRIM5Q9C035 493 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 KANSL2Q9H9L4 492 aa18.86■□□□□ 0.61
CHMP1A-204ENST00000547687 A0A0G2JLL6 359 aaPredicted RBP18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 BECN2A8MW95 431 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 GOLGA6L6A8MZA4 724 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 CXCL11O14625 94 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 EEF2P13639 858 aaKnown RBP18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 ATP2B1P20020 1258 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 NOM1Q5C9Z4 860 aaKnown RBP18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 PRRT2Q7Z6L0 340 aaPredicted RBP18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 LZTS2Q9BRK4 669 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 BRMS1Q9HCU9 246 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 CPA4Q9UI42 421 aa18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 FRMPD2Q68DX3 1309 aaPredicted RBP18.85■□□□□ 0.61
CHMP1A-204ENST00000547687 GH2P01242 217 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 SNHG28P0DPA3 235 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 PTPREP23469 700 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 ZNF75DP51815 510 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 SP3Q02447 781 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 PPP4R3BQ5MIZ7 849 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 SIAH1Q8IUQ4 282 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 SPC24Q8NBT2 197 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 NYAP2Q9P242 653 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 FBXO2Q9UK22 296 aaPredicted RBP18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 KCNH3Q9ULD8 1083 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 TRIM17Q9Y577 477 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 TPM3P06753 285 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 TREML2Q5T2D2 321 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 ANKRD23Q86SG2 305 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 PLA2G4DQ86XP0 818 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 DHX40Q8IX18 779 aaKnown RBP18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 SPZ1Q9BXG8 430 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 ARHGAP39Q9C0H5 1083 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 UBA5Q9GZZ9 404 aa18.84■□□□□ 0.61
CHMP1A-204ENST00000547687 LOC285556D6RIA3 1793 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms