RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MTRQ99707 1265 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 RIC8AQ9NPQ8 531 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 SCN9AQ15858 1988 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 BICDL2A1A5D9 508 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TUBB2AQ13885 445 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TMEM266Q2M3C6 531 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 PPFIBP1Q86W92 1011 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 COL23A1Q86Y22 540 aaPredicted RBP11.1□□□□□ -0.63
SS18-205ENST00000542420 REXO1L1PQ8IX06 675 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 CERS5Q8N5B7 392 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TSC1Q92574 1164 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TUBB2BQ9BVA1 445 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 USP40Q9NVE5 1235 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 NYAP2Q9P242 653 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 ABCB11O95342 1321 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 PSMA7O14818 248 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 KLRC4O43908 158 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 SHMT1P34896 483 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 CLK2P49760 499 aaKnown RBP11.1□□□□□ -0.63
SS18-205ENST00000542420 SEPT2Q15019 361 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 CCDC93Q567U6 631 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 MOXD1Q6UVY6 613 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 CABP7Q86V35 215 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 FAM114A1Q8IWE2 563 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TRMT44Q8IYL2 757 aaKnown RBP11.1□□□□□ -0.63
SS18-205ENST00000542420 SUPT20HQ8NEM7 779 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 NELFBQ8WX92 580 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 CALML4Q96GE6 196 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 MTMR9Q96QG7 549 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 TMEM60Q9H2L4 133 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 STK24Q9Y6E0 443 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 SLX4Q8IY92 1834 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 ATRNL1Q5VV63 1379 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 KIF13BQ9NQT8 1826 aa11.1□□□□□ -0.63
SS18-205ENST00000542420 PVALEFA0A1B0GWK0 134 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 APOBEC3HQ6NTF7 200 aaKnown RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 CDC42EP5Q6NZY7 148 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 USP17L2Q6R6M4 530 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 PIGSQ96S52 555 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 SERPINA10Q9UK55 444 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 CTNND2Q9UQB3 1225 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 PPP2R2CQ9Y2T4 447 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 ATAD5Q96QE3 1844 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 USP17L5A8MUK1 530 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 AKR1B1P15121 316 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 MRPL12P52815 198 aaKnown RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 COPB1P53618 953 aaKnown RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 TUBB4BP68371 445 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 NCBP1Q09161 790 aaKnown RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 KARSQ15046 597 aaKnown RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 TCP11X2Q5H9J9 407 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 PAXIP1Q6ZW49 1069 aaPredicted RBP11.09□□□□□ -0.63
SS18-205ENST00000542420 KCTD17Q8N5Z5 321 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 RASGRP4Q8TDF6 673 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 CNKSR1Q969H4 720 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 FEZ1Q99689 392 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 DNAI1Q9UI46 699 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 LOXHD1Q8IVV2 1947 aa11.09□□□□□ -0.63
SS18-205ENST00000542420 G3V3G9 751 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 ADAMTS3O15072 1205 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 CCNT1O60563 726 aaKnown RBP11.08□□□□□ -0.64
SS18-205ENST00000542420 MFAP3LO75121 409 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 ENTPD3O75355 529 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 CRKP46108 304 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 TRAF1Q13077 416 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 DCAF8Q5TAQ9 597 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 TRIM65Q6PJ69 517 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 TMTC1Q8IUR5 882 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 RETREG2Q8NC44 543 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 TBCKQ8TEA7 893 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 CUL5Q93034 780 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 DDX4Q9NQI0 724 aaKnown RBP11.08□□□□□ -0.64
SS18-205ENST00000542420 TRMT1Q9NXH9 659 aaKnown RBP11.08□□□□□ -0.64
SS18-205ENST00000542420 KCNJ18B7U540 433 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 ZBTB5O15062 677 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 CCDC175P0C221 793 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 GOLGA8HP0CJ92 632 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 PSMD2Q13200 908 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 KCNJ12Q14500 433 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 KRT31Q15323 416 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 KMT5BQ4FZB7 885 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 HYIQ5T013 277 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 SLC51AQ86UW1 340 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 PLCD3Q8N3E9 789 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 NUP58Q9BVL2 599 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 KANSL2Q9H9L4 492 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 MYO1AQ9UBC5 1043 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 PI4KBQ9UBF8 816 aa11.08□□□□□ -0.64
SS18-205ENST00000542420 CCNE1P24864 410 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 PRCPP42785 496 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 AP3B2Q13367 1082 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 CALCRLQ16602 461 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 LETM2Q2VYF4 491 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 SLC4A8Q2Y0W8 1093 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 TATDN1Q6P1N9 297 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 HOMER1Q86YM7 354 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 RASSF8Q8NHQ8 419 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 TRIM9Q9C026 710 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 JMJD4Q9H9V9 463 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 KDM3AQ9Y4C1 1321 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms