RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NCAPHQ15003 741 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 SEPT2Q15019 361 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 TTBK2Q6IQ55 1244 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 DTHD1Q6ZMT9 781 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 SH3RF1Q7Z6J0 888 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 IQUBQ8NA54 791 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 SPATA20Q8TB22 786 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 PAGE5Q96GU1 130 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 FER1L6Q2WGJ9 1857 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 TULP2O00295 520 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 POLD1P28340 1107 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 PRPHP41219 470 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 MYL5Q02045 173 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 ORC2Q13416 577 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-212ENST00000540304 MORC3Q14149 939 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 SHROOM1Q2M3G4 852 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-212ENST00000540304 KCTD1Q719H9 257 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 NEK8Q86SG6 692 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 AGBL3Q8NEM8 1001 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 COA7Q96BR5 231 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 MTMR8Q96EF0 704 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 ZNF70Q9UC06 446 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-212ENST00000540304 DACH1Q9UI36 760 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 HERC5Q9UII4 1024 aaKnown RBP10.92□□□□□ -0.66
CLIP1-212ENST00000540304 TCP10L2B9ZVM9 353 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 ZBTB5O15062 677 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 GDF11O95390 407 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 BMP6P22004 513 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SETQ01105 290 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SATB1Q01826 763 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 E2F4Q16254 413 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 RBM26Q5T8P6 1007 aaKnown RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SLFN13Q68D06 897 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 MLKLQ8NB16 471 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 TMEM60Q9H2L4 133 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 ZBTB12Q9Y330 459 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 CEP83Q9Y592 693 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 CLRN2A0PK11 232 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 USP17L10C9JJH3 530 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 PTGS1P23219 599 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SLC16A2P36021 539 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SLC1A4P43007 532 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 MAP2K1Q02750 393 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 LETM2Q2VYF4 491 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SPDYE2Q495Y8 402 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 DALRD3Q5D0E6 543 aaKnown RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 SIAH1Q8IUQ4 282 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 GMCL1P1Q8NEA9 526 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 FAM151AQ8WW52 585 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 MTFR1LQ9H019 292 aa10.91□□□□□ -0.66
CLIP1-212ENST00000540304 BIN2Q9UBW5 565 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-212ENST00000540304 RAD21O60216 631 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 NEMFO60524 1076 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 CCNT1O60563 726 aaKnown RBP10.9□□□□□ -0.66
CLIP1-212ENST00000540304 PPP1R11O60927 126 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-212ENST00000540304 OR52Z1P0C646 297 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 AFMP43652 599 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 C1QBPQ07021 282 aaKnown RBP10.9□□□□□ -0.66
CLIP1-212ENST00000540304 JAKMIP3Q5VZ66 844 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 PDXDC2PQ6P474 469 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 CCDC186Q7Z3E2 898 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 MTMR14Q8NCE2 650 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 TBCKQ8TEA7 893 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 KCNF1Q9H3M0 494 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLIP1-212ENST00000540304 RIC8AQ9NPQ8 531 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 TMEM260Q9NX78 707 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 NRBP1Q9UHY1 535 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 ATF5Q9Y2D1 282 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-212ENST00000540304 SPDYE4A6NLX3 237 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 MYO1BO43795 1136 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 GH2P01242 217 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 DPYDQ12882 1025 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 FKBP1CQ5VVH2 108 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 GMCL1Q96IK5 515 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 TAOK3Q9H2K8 898 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 SYNPO2Q9UMS6 1093 aa10.9□□□□□ -0.66
CLIP1-212ENST00000540304 CNTNAP1P78357 1384 aa10.9□□□□□ -0.67
CLIP1-212ENST00000540304 CXCL9Q07325 125 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 CUL5Q93034 780 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 GSDMAQ96QA5 445 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 HSD3B7Q9H2F3 369 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 F5H6K3 240 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 LMOD1P29536 600 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-212ENST00000540304 MRPL12P52815 198 aaKnown RBP10.89□□□□□ -0.67
CLIP1-212ENST00000540304 KLRC3Q07444 240 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 SGSM3Q96HU1 749 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 AK8Q96MA6 479 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 CCSER1Q9C0I3 900 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 DISC1Q9NRI5 854 aa10.89□□□□□ -0.67
CLIP1-212ENST00000540304 NDUFB10O96000 172 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CASP1P29466 404 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 UBA7P41226 1012 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 STAT6P42226 847 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 JAG1P78504 1218 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 RRP1BQ14684 758 aaKnown RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 KARSQ15046 597 aaKnown RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 QRICH1Q2TAL8 776 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CIAPIN1Q6FI81 312 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 MYCBPQ99417 103 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms