RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 STAG1Q8WVM7 1258 aa8.21□□□□□ -1.09
MSH6-209ENST00000538136 COPS5Q92905 334 aa8.21□□□□□ -1.09
MSH6-209ENST00000538136 SPATC1LQ9H0A9 340 aa8.21□□□□□ -1.09
MSH6-209ENST00000538136 DDX11L8A8MPP1 907 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 ZNF280AP59817 542 aaPredicted RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 OSTNP61366 133 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 KRT85P78386 507 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 PRKCZQ05513 592 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 CCL14Q16627 93 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 PPP4R3BQ5MIZ7 849 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 MFSD14CQ5VZR4 134 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 ZNF296Q8WUU4 475 aaPredicted RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 FAM161BQ96MY7 647 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 ACAD9Q9H845 621 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 LY9Q9HBG7 655 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 SH2B1Q9NRF2 756 aaPredicted RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 B4DLN1 442 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 KINO60870 393 aaKnown RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 DEXIO95424 95 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 MCM2P49736 904 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 IRX5P78411 483 aaPredicted RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 MOV10L1Q9BXT6 1211 aaKnown RBP8.21□□□□□ -1.1
MSH6-209ENST00000538136 GBP3Q9H0R5 595 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 CREBZFQ9NS37 354 aa8.21□□□□□ -1.1
MSH6-209ENST00000538136 SFI1A8K8P3 1242 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 C19orf81C9J6K1 198 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ZNF543Q08ER8 600 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 NONOQ15233 471 aaKnown RBP eCLIP8.2□□□□□ -1.1
MSH6-209ENST00000538136 MTERF2Q49AM1 385 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 DGKHQ86XP1 1220 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 TRIM50Q86XT4 487 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 CYP2W1Q8TAV3 490 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 PIGOQ8TEQ8 1089 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.2□□□□□ -1.1
MSH6-209ENST00000538136 CCDC34Q96HJ3 373 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ZMYND8Q9ULU4 1186 aaPredicted RBP8.2□□□□□ -1.1
MSH6-209ENST00000538136 SLX4Q8IY92 1834 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 BECN2A8MW95 431 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 FKTNO75072 461 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 CCT6AP40227 531 aaKnown RBP8.2□□□□□ -1.1
MSH6-209ENST00000538136 PPATQ06203 517 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 GNPTABQ3T906 1256 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 MUM1L1Q5H9M0 696 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 DEFB128Q7Z7B8 93 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.2□□□□□ -1.1
MSH6-209ENST00000538136 CLIC6Q96NY7 704 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 RNF19AQ9NV58 838 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ADD3Q9UEY8 706 aaKnown RBP8.2□□□□□ -1.1
MSH6-209ENST00000538136 A0A1B0GVL5 298 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 GPR25O00155 361 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ZBTB5O15062 677 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 SRGAP2CP0DJJ0 459 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ERVK-9P63128 1117 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ERVK-24P63145 666 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ASPRV1Q53RT3 343 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 NOM1Q5C9Z4 860 aaKnown RBP8.2□□□□□ -1.1
MSH6-209ENST00000538136 TCERG1LQ5VWI1 586 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 PLEKHH3Q7Z736 793 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 CDR2LQ86X02 465 aaPredicted RBP8.2□□□□□ -1.1
MSH6-209ENST00000538136 SYCP3Q8IZU3 236 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 BLIDQ8IZY5 108 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 ZBED2Q9BTP6 218 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 CHMP5Q9NZZ3 219 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 NWD2Q9ULI1 1742 aa8.2□□□□□ -1.1
MSH6-209ENST00000538136 WWC2Q6AWC2 1192 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 CXCL17Q6UXB2 119 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 SESTD1Q86VW0 696 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 NLRP4Q96MN2 994 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 ZNF396Q96N95 335 aaPredicted RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 ZNF577Q9BSK1 485 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 TXNRD2Q9NNW7 524 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 RBM28Q9NW13 759 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 AKT3Q9Y243 479 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 GAKO14976 1311 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 WDR46O15213 610 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 ITGBL1O95965 494 aaPredicted RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 PRKAR2AP13861 404 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 PPP2R5BQ15173 497 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 PDXDC2PQ6P474 469 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 MB21D2Q8IYB1 491 aaPredicted RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 FSIP1Q8NA03 581 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 JMJD4Q9H9V9 463 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 FEM1BQ9UK73 627 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 TDP2O95551 362 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 GGPS1O95749 300 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 ADCYAP1R1P41586 468 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 CTTNQ14247 550 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 XKR9Q5GH70 373 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 KIAA1755Q5JYT7 1200 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 PPP4R3AQ6IN85 833 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 SPATA33Q96N06 139 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 VPS33BQ9H267 617 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 ZSWIM6Q9HCJ5 1215 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 TMX2Q9Y320 296 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 FAM208AQ9UK61 1670 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 BRCA2P51587 3418 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 SPDYE5A6NIY4 337 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 USO1O60763 962 aaKnown RBP8.19□□□□□ -1.1
MSH6-209ENST00000538136 MIER3Q7Z3K6 550 aa8.19□□□□□ -1.1
MSH6-209ENST00000538136 SNX29Q8TEQ0 813 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms